TABLE 1.

PCR primer sets used for ChIP-PCR

PCR primer sequences were aligned with human genome (hg19). Sequences of PCR primer sets of γ-ALR jxn, Xp mono-HOR jxn, HOR satellite (D′), Xq mono-HOR jxn, and Xq sat jxn were from Mravinac et al. (32). NA, not applicable.

Genomic site	Description	Position (hg19)
A: γ-ALR jxn	Forward: 5′-agcccgaggaaaatactggtgagg-3′	chX: 58319092–58319315
	Reverse: 5′-gctgtctttctagtttttgtcgtgggttat-3′
B: Xp mono sat	Forward: 5′-tgcagagggatatttgtaagcat-3′	chX: 58514700–58514948
	Reverse: 5′-tgcttctgtctaattttcgtgtg-3′
C: Xp mono-HOR jxn	Forward: 5′-aacgctgcgctatcaaagggaaagt-3′	chX: 58560457–58560769
	Reverse: 5′-ggacatgtggagcgctttgtgc-3′
D: HOR satellite	Forward: 5′-aaagggtgtttcgaacctga-3′	chX: 61718416–61718622
	Reverse: 5′-tgaacatgccttttgatgga-3′
D′: HOR satellite	Forward: 5′-ataatttcccataactaaacaca-3′	chX: 58605896–58606430
	Reverse: 5′-tgtgaagataaaggaaaaggctt-3′
E: Xq mono-HOR jxn	Forward: 5′-gacctcaaagcactctaaatacac-3′	chX: 61725908–61726403
	Reverse: 5′-cttcacataaaaactagacagacag-3′
F: Xq mono sat	Forward: 5′-aaaattgaggtttcaaaactgct-3′	chX: 61745729–61745968
	Reverse: 5′-ttccttttcatagcgcactt-3′
G: Xq sat jxn	Forward: 5′-cctgctgaatcaaaacaatggt-3′	chX: 62045588–62045976
	Reverse: 5′-caaagaaggctgggtgagaag-3′
Universal α satellite	Forward: 5′-cattctcagaaacttctttgtg-3′	NA
	Reverse: 5′-cttctgtctagtttttatgtga-3′