Table 1.

External data processed and integrated into the cell line portal

Data type	Source	Number cell lines	Reference
Cancer cell line RNA-Seq data (2 × 101 bp)	CCLE	781	[4], https://cghub.ucsc.edu/datasets/ccle.html
Cancer cell line RNA-Seq data (2 × 75 bp)	Klijn et al.	301	[5], https://www.ebi.ac.uk/ega/datasets/EGAD00001000725
Mutations	CCLE	781	[4]
Mutations	Klijn et al.	675	[5], Supplementary data 3
HLA Class I and Class II types	Adams et al.	49	[16]