Table 1.
Eight select cases of similarity-based mis-assignment
| # | GI # | Accession # | Description | Species |
|---|---|---|---|---|
| 1 | 19698819 | gb|AAL91145.1 | putative protein {Nup85} | Arabidopsis thaliana |
| 2 | 7573329 | emb|CAB87799.1 | putative protein {Sec16} | Arabidopsis thaliana |
| 3 | 296819643 | ref|XP_002849880.1 | protein kinase domain-containing protein {+Nic96} | Arthroderma otae CBS 113480 |
| 4 | 557867390 | gb|ESS70565.1 | unspecified product {Sec16} | Trypanosoma cruzi Dm28c |
| 5 | 316978722 | gb|EFV61666.1 | putative ATP synthase F1, delta subunit {Nup98-96} | Trichinella spiralis |
| 6 | 308809856 | ref|XP_003082237.1 | ATP-dependent RNA helicase (ISS) {Sec16} | Ostreococcus tauri |
| 7 | 255574074 | ref|XP_002527953.1 | nucleotide binding protein, putative {Sec16} | Ricinus communis |
| 8 | 443916862 | gb|ELU37796.1 | DUF1479 domain-containing protein {+Nup85} | Rhizoctonia solani AG-1 IA |
Column names: #: case number, GI#: gene identifier number, Accession#: database and accession number, Description: description line, Species: species name (and strain type where available). In curly brackets within the Description field, we list the corresponding protein domains (Nup85, Nup98-96, Nic96 nucleoporins – and ancestral coatomer element 1 Sec16 (ACE1-Sec16-like); + sign: partially correct annotation, missing the domain indicated, two cases)