Table 5.
List of SNPs ralated to disorders of nucleotide excision repair.
| Transcript_id | KEGG GENE NAME | Site | Ref | CS_type | TS_type |
|---|---|---|---|---|---|
| comp74141_c0_seq1 | ERCC1 | 2223 | G | – | A |
| comp74141_c0_seq2 | 2070 | G | – | A | |
| comp74141_c0_seq2 | 847 | G | T | T | |
| comp88233_c0_seq1 | ERCC2 | 128 | G | A | – |
| comp88233_c0_seq1 | 2140 | T | – | C | |
| comp88233_c0_seq1 | 2450 | G | – | T | |
| comp108677_c0_seq1 | CCNH | 190 | C | T | – |
| comp61358_c0_seq1 | Cul4A | 1710 | A | C | – |
| comp61358_c0_seq1 | 871 | C | – | A | |
| comp71102_c0_seq1 | Cul4B | 1738 | A | – | G |
| comp71102_c0_seq1 | 811 | A | – | G | |
| comp32714_c0_seq1 | DDB1 | 129 | G | – | A |
| comp32717_c0_seq1 | 1429 | G | – | A | |
| comp32717_c0_seq1 | 433 | T | C | – | |
| comp32741_c0_seq1 | 1157 | G | C | C | |
| comp80349_c0_seq1 | LIG1 | 3623 | C | – | T |
| comp90786_c1_seq5 | PCNA | 105 | T | C | C |
| comp90786_c1_seq5 | 13 | G | – | A | |
| comp90786_c1_seq5 | 1314 | G | – | A | |
| comp90786_c1_seq5 | 1683 | A | G | – | |
| comp90786_c1_seq5 | 1934 | G | A | A | |
| comp90786_c1_seq5 | 2038 | A | G | – | |
| comp90786_c1_seq5 | 2068 | A | G | G | |
| comp90786_c1_seq5 | 22 | A | G | – | |
| comp90786_c1_seq5 | 2395 | A | G | – | |
| comp90786_c1_seq5 | 2465 | G | – | A | |
| comp90786_c1_seq5 | 2487 | G | A | A | |
| comp90786_c1_seq5 | 2501 | A | G | – | |
| comp90786_c1_seq5 | 2543 | G | – | A | |
| comp90786_c1_seq5 | 2562 | A | G | – | |
| comp90786_c1_seq5 | 93 | G | C | – | |
| comp90786_c1_seq7 | PCNA | 105 | T | C | C |
| comp90786_c1_seq7 | 1240 | T | C | C | |
| comp90786_c1_seq7 | 1244 | C | A | A | |
| comp90786_c1_seq7 | 13 | G | – | A | |
| comp90786_c1_seq7 | 1818 | G | A | A | |
| comp90786_c1_seq7 | 2077 | A | C | C | |
| comp90786_c1_seq7 | 22 | A | G | – | |
| comp90786_c1_seq7 | 2401 | A | – | G | |
| comp90786_c1_seq7 | 2615 | C | – | G | |
| comp90786_c1_seq7 | 93 | G | C | – | |
| comp33042_c0_seq1 | RBX1 | 89 | G | T | – |
| comp89984_c0_seq1 | RPA | 1679 | C | – | T |
| comp89984_c0_seq1 | 1829 | G | A | – | |
| comp89984_c0_seq1 | 2071 | G | – | A | |
| comp89984_c0_seq1 | 2600 | C | G | – | |
| comp89984_c0_seq1 | 2645 | G | T | – | |
| comp89984_c0_seq1 | 3312 | A | G | – | |
| comp89984_c0_seq1 | 799 | C | T | – | |
| comp89984_c0_seq1 | 815 | G | T | – | |
| comp33075_c0_seq1 | RPA2 | 100 | T | C | C |
| comp57325_c0_seq1 | RPA12 | 385 | G | – | C |
| comp59041_c0_seq1 | RPA49 | 757 | G | A | – |
| comp59041_c0_seq1 | 864 | A | – | G | |
| comp59044_c0_seq1 | 380 | G | – | C | |
| comp72565_c0_seq1 | RPA3 | 475 | A | – | G |
| comp72565_c0_seq1 | 802 | G | A | – | |
| comp88203_c0_seq2 | RPA | 4663 | G | C | – |
| comp81979_c0_seq1 | RPA43 | 1011 | C | – | T |
| comp81979_c0_seq1 | 1032 | C | T | – | |
| comp81979_c0_seq1 | 1098 | G | – | A | |
| comp56791_c0_seq1 | RFC1 | 3527 | T | C | C |
| comp56791_c0_seq1 | 3757 | A | – | G | |
| comp36422_c0_seq1 | RFC2 | 1188 | C | – | T |
| comp85228_c0_seq1 | RFC2 | 1319 | T | G | – |
| comp85228_c0_seq1 | 1744 | A | C | – | |
| comp85228_c0_seq1 | 1844 | C | T | – | |
| comp36017_c0_seq1 | RFC3 | 335 | A | C | C |
| comp37382_c0_seq1 | RFC3 | 49 | C | T | – |
| comp82958_c1_seq1 | TFIIH2 | 122 | G | – | A |
| comp57951_c0_seq1 | TTDA | 513 | G | T | – |
| comp91081_c0_seq1 | XPA | 1705 | T | C | – |
| comp91081_c0_seq3 | 1633 | T | G | – | |
| comp91081_c0_seq3 | 2827 | A | T | – | |
| comp91081_c0_seq4 | 2669 | A | T | – | |
| comp91081_c0_seq4 | 2893 | C | A | A |
The identical bases with reference sequences were indicated with “–”.