. Author manuscript; available in PMC: 2016 Dec 1.

Published in final edited form as: J Am Soc Mass Spectrom. 2015 May 27;26(12):2002–2008. doi: 10.1007/s13361-015-1169-z

Table 1.

Number of unique peptidome peptides identified by different informatics approaches in each tumor sample.

Tumor samples	MS-GF+	AMT tag	IQ
A_0	2440	4370	5012

A_5	2248	4315	4729

A_30	2489	4963	5351

A_60	2748	4919	5336

B_0	2309	4544	4759

B_5	2247	4590	4791

B_30	2332	4523	4878

B_60	2344	4707	4817

C_0	2741	4496	4966

C_5	2590	4802	5176

C_30	2549	4579	5100

C_60	2341	4757	5075