Table 4.
Top 20 AEI per tissue
| Amygdala | BA10 | BA22 | BA24 | BA46 | Cerebellum | Hippocampus | Insula | Post. putamen | Raphae nucleus | |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | SNHG14 | BCAP29 | C7orf41 | ATP6V1G2 | SLC8A1 | ERV3-1 | RP11-785H5.1 | CD24P4 | CCT5 | GSTA4 |
| 2 | STON2 | LMO7 | ZNF91 | ATP6V1G2-DDX39B | RCAN2 | RP11-862 L9.3 | RP11-785H5.2 | TTTY14 | lnc-SNURF-3 | NDRG3 |
| 3 | lnc-SNURF-3 | NHP2L1 | NHP2L1 | SYNJ1 | SPTBN1 | CTD-2353 F22.1 | DNAJA4 | PILRB | SNHG14 | RALGAPB |
| 4 | AFTPH | NUDT5 | ZNF391 | TXN2 | LPHN3 | NMNAT2 | PDE1A | AC005592.2 | PDXP | RBM26 |
| 5 | UBE3A | RAB21 | NGEF | PRPF8 | FAM212B | GPRIN3 | LANCL2 | FGF1 | SH3BP1 | GPRIN3 |
| 6 | PEG3 | UBE3A | SENP2 | FAM120A | PSD3 | CHN1 | DCP2 | MAP1LC3B | SPP1 | SOGA1 |
| 7 | ZIM2 | IL6ST | LRRC6 | NHP2L1 | AHSA1 | SEPT3 | C9orf72 | POLR3F | ZEB1 | NALCN |
| 8 | RP11-746 M1.1 | UFM1 | LPAR1 | YWHAB | SERINC1 | UBR3 | USP47 | RPL21P3 | PYGB | FUT9 |
| 9 | CELSR2 | PDGFRA | RPS20 | TAOK1 | ANKS1B | GAS7 | KIAA1549 | CCDC103 | YWHAG | RIMS2 |
| 10 | AP1S1 | ZEB1 | ENO4 | POMP | LINGO1 | PLK2 | NEFL | FAM187A | PBX3 | NHP2L1 |
| 11 | NHP2L1 | NEO1 | KIAA1598 | RP11-269G24.3 | ANK2 | EPB41L1 | PRRC2C | GFAP | MANBAL | NMNAT2 |
| 12 | OPA1 | TAF2 | NECAB2 | TANC2 | AL391357.1 | NEDD4L | STARD13 | ARHGAP32 | SV2B | SEPT3 |
| 13 | WDFY3 | AL391152.1 | FAM107A | IGFBP5 | DDOST | MAP2 | CROCCP3 | PCM1 | SETD6 | PPP3CA |
| 14 | MEF2A | CNGB3 | CYFIP1 | PPFIBP1 | PINK1 | YWHAG | EPHA7 | PDE8B | KIF5C | USP24 |
| 15 | LHFPL3 | CPNE3 | ARHGAP32 | SPHKAP | PINK1-AS | lnc-GALNT2-1 | AC010127.3 | NRXN3 | ECHS1 | RP11-981G7.1 |
| 16 | RPS6KA2 | ATF6 | SCP2 | MYO5A | CTSB | AL691479.1 | SCN1A | EIF2AK4 | QKI | GAS7 |
| 17 | CDC14B | NAV2-AS1 | ANKS1B | GAS7 | FMN2 | CASC7 | C1orf226 | PRDM2 | FAM13C | MAPK9 |
| 18 | PRICKLE2 | TNS3 | PPP1R12B | PRKCB | DST | MBP | RP11-565P22.6 | WDR41 | ACIN1 | RP11-463C8.4 |
| 19 | RP11-129B22.1 | ADNP2 | SLC6A1 | RP11-862 L9.3 | -- | NCL | AJAP1 | ARCN1 | FDFT1 | ZNF91 |
| 20 | ARHGAP32 | EXOC5 | APBA1 | PCDH9 | -- | MAP1A | SRPK2 | TPM1 | MOCS1 | APOL2 |
After restricting the list of genes with AEI to those with >30 reads per SNP averaged across gene, the list for each region is sorted by average AEI fold-change