Table 1. Estimation of genome size and sequencing of selected Fabeae species.
Species | Code | Accession | Genome size | Sequencing | Clustering max. reads | Clust. 0.01x | ||
---|---|---|---|---|---|---|---|---|
Source( 1 ) | Code | 1Cx [Gbp]( 2 ) | run acc.no. | reads | coverage | [reads] | ||
Vicia | ||||||||
V. sativa 'Ebena' | VSA | commercial | 1.77 | ERR413103 | 1050158 | 0.059 | 177360 | |
V. villosa | VVL | IPK | VIC876 | 2.04 | ERR413122 | 2671672 | 0.131 | 203620 |
V. lathyroides L. | VLT | IPK | VIC874 | 2.43 | ERR413100 | 4812664 | 0.198 | 242544 |
V. cracca L. var. cracca | VCR | IPK | VIC71 | 2.90 | ERR413096 | 6292470 | 0.217 | 289684 |
V. tetrasperma (L.) Schreb. | VTS | IPK | VIC726 | 3.05 | ERR413111 | 7873852 | 0.258 | 305381 |
V. sepium L. | VSP | IPK | VIC55 | 3.74 | ERR413104, ERR413105 | 1897538 | 0.051 | 374378 |
V. grandiflora | VGR | IPK | VIC741 | 3.78 | ERR413106 | 3289836 | 0.087 | 378095 |
V. hirsuta (L.) S.F.Gray | VHR | IPK | VIC728 | 3.88 | ERR413114 | 6606736 | 0.170 | 387533 |
V. ervilia (L.) Willd. | VER | IPK | ERV52 | 4.06 | ERR413112 | 4593996 | 0.113 | 405723 |
V. unijuga A.Br. | VUN | IPK | VIC78 | 4.37 | ERR413109 | 7201796 | 0.165 | 436775 |
V. pannonica 'Dětěnická panonská' | VPN | commercial | 5.73 | ERR413097, ERR413098 | 2101204 | 0.037 | 573108 | |
V. pisiformis L. | VPF | IPK | VIC36 | 6.15 | ERR413110 | 4460146 | 0.072 | 615407 |
V. narbonensis | VNR | ICARDA | 14 | 6.69 | ERR413121 | 3588026 | 0.054 | 668708 |
V. sylvatica L. | VSL | IPK | VIC63 | 6.98 | ERR413113 | 4883944 | 0.070 | 698292 |
V. melanops Sibth. et Sm. var. melanops | VML | IPK | VIC474 | 8.07 | ERR413101 | 3595696 | 0.045 | 806606 |
V. peregrina L. | VPR | IPK | VIC765 | 8.45 | ERR413099 | 6197134 | 0.073 | 844650 |
V. faba 'Merkur' | VFB | commercial | 13.41 | ERR413107, ERR413108 | 3192982 | 0.024 | 1340985 | |
Lens | ||||||||
L. culinaris 'Eston' | LNS | commercial | 4.29 | ERR413115 | 5854630 | 0.137 | 428902 | |
Lathyrus | ||||||||
L. vernus (L.) Bernh. | LAV | natural population | 5.91 | ERR413116, ERR413117 | 6632676 | 0.112 | 591250 | |
L. sativus L. | LAS | commercial | 6.52 | ERR413118, ERR413119 | 3308288 | 0.051 | 652473 | |
L. latifolius L. | LAL | commercial | 9.98 | ERR413120 | 3091852 | 0.031 | 997756 | |
Pisum | ||||||||
P. sativum 'Terno' | PST | commercial | 4.36 | ERR063464 | 4525544 | 0.104 | 436237 | |
P. fulvum | PFL | ICARDA | IG64207 | 4.69 | ERR413083 | 5015824 | 0.107 | 468804 |
(1) Seedbank abbreviations: IPK, Leibniz Institute for Plant Genetics and Crop Plant Research; ICARDA, International Center for Agricultural Research in the Dry Areas
(2) In diploids (all species except for the tetraploid V. cracca) 1Cx = 1C. See S1 Table for details on genome size estimation.