Table 5. Minor allele frequency, information index, heterozygosity, and inbreeding coefficient of the 57 SNP loci scored on 64 pineapple accessions.
| SNP ID | Minor allele frequency | Information index | Observed heterozygosity | Expected heterozygosity | Inbreeding coefficient |
|---|---|---|---|---|---|
| Ac4 | 0.440 | 0.686 | 0.433 | 0.493 | 0.122 |
| Ac5 | 0.313 | 0.622 | 0.478 | 0.430 | −0.110 |
| Ac6 | 0.313 | 0.622 | 0.388 | 0.430 | 0.098 |
| Ac9 | 0.159 | 0.438 | 0.288 | 0.268 | −0.076 |
| Ac10 | 0.239 | 0.550 | 0.478 | 0.364 | −0.314 |
| Ac11 | 0.246 | 0.558 | 0.284 | 0.371 | 0.236 |
| Ac13 | 0.440 | 0.686 | 0.433 | 0.493 | 0.122 |
| Ac15 | 0.379 | 0.663 | 0.485 | 0.471 | −0.030 |
| Ac17 | 0.366 | 0.657 | 0.433 | 0.464 | 0.067 |
| Ac19 | 0.119 | 0.366 | 0.239 | 0.210 | −0.136 |
| Ac20 | 0.431 | 0.684 | 0.800 | 0.490 | −0.631 |
| Ac21 | 0.254 | 0.566 | 0.507 | 0.379 | −0.340 |
| Ac31 | 0.067 | 0.246 | 0.134 | 0.125 | −0.072 |
| Ac32 | 0.396 | 0.671 | 0.791 | 0.478 | −0.654 |
| Ac33 | 0.418 | 0.680 | 0.836 | 0.487 | −0.718 |
| Ac34 | 0.090 | 0.302 | 0.060 | 0.163 | 0.634 |
| Ac36 | 0.336 | 0.638 | 0.433 | 0.446 | 0.030 |
| Ac37 | 0.357 | 0.652 | 0.429 | 0.459 | 0.067 |
| Ac38 | 0.100 | 0.325 | 0.015 | 0.180 | 0.915 |
| Ac40 | 0.157 | 0.434 | 0.254 | 0.264 | 0.040 |
| Ac41 | 0.119 | 0.366 | 0.239 | 0.210 | −0.136 |
| Ac42 | 0.269 | 0.582 | 0.418 | 0.393 | −0.063 |
| Ac43 | 0.362 | 0.654 | 0.723 | 0.462 | −0.566 |
| Ac44 | 0.453 | 0.689 | 0.438 | 0.496 | 0.117 |
| Ac45 | 0.112 | 0.351 | 0.194 | 0.199 | 0.024 |
| Ac46 | 0.265 | 0.578 | 0.470 | 0.390 | −0.205 |
| Ac47 | 0.300 | 0.611 | 0.600 | 0.420 | −0.429 |
| Ac48 | 0.396 | 0.671 | 0.433 | 0.478 | 0.095 |
| Ac50 | 0.396 | 0.671 | 0.433 | 0.478 | 0.095 |
| Ac51 | 0.119 | 0.366 | 0.239 | 0.210 | −0.136 |
| Ac53 | 0.400 | 0.673 | 0.800 | 0.480 | −0.667 |
| Ac54 | 0.077 | 0.271 | 0.154 | 0.142 | −0.083 |
| Ac55 | 0.321 | 0.628 | 0.463 | 0.436 | −0.062 |
| Ac56 | 0.410 | 0.677 | 0.403 | 0.484 | 0.167 |
| Ac58 | 0.227 | 0.536 | 0.303 | 0.351 | 0.137 |
| Ac59 | 0.302 | 0.612 | 0.349 | 0.421 | 0.171 |
| Ac60 | 0.439 | 0.686 | 0.879 | 0.493 | −0.784 |
| Ac62 | 0.261 | 0.574 | 0.254 | 0.386 | 0.343 |
| Ac63 | 0.127 | 0.380 | 0.254 | 0.222 | −0.145 |
| Ac70 | 0.276 | 0.589 | 0.493 | 0.400 | −0.232 |
| Ac73 | 0.336 | 0.638 | 0.672 | 0.446 | −0.506 |
| Ac75 | 0.402 | 0.674 | 0.803 | 0.481 | −0.671 |
| Ac76 | 0.216 | 0.522 | 0.433 | 0.339 | −0.276 |
| Ac77 | 0.470 | 0.691 | 0.463 | 0.498 | 0.071 |
| Ac81 | 0.313 | 0.622 | 0.388 | 0.430 | 0.098 |
| Ac82 | 0.455 | 0.689 | 0.879 | 0.496 | −0.772 |
| Ac84 | 0.493 | 0.693 | 0.448 | 0.500 | 0.104 |
| Ac85 | 0.468 | 0.691 | 0.841 | 0.498 | −0.689 |
| Ac94 | 0.119 | 0.366 | 0.179 | 0.210 | 0.148 |
| Ac95 | 0.333 | 0.637 | 0.667 | 0.444 | −0.500 |
| Ac96 | 0.052 | 0.205 | 0.104 | 0.099 | −0.055 |
| Ac97 | 0.354 | 0.650 | 0.708 | 0.457 | −0.548 |
| Ac100 | 0.452 | 0.689 | 0.841 | 0.495 | −0.698 |
| Ac101 | 0.306 | 0.616 | 0.484 | 0.425 | −0.138 |
| Ac102 | 0.423 | 0.681 | 0.846 | 0.488 | −0.733 |
| Ac104 | 0.067 | 0.246 | 0.104 | 0.125 | 0.166 |
| Ac105 | 0.462 | 0.690 | 0.924 | 0.497 | −0.859 |
| Mean | 0.298 | 0.565 | 0.465 | 0.385 | −0.157 |