Table 6. Likelihood assignment of parentage of pineapple (A. comosus var. comosus) accessions based on 57 SNP markers with LOD scores above 80% probability.

Candidate parenta	Botanical variety	Offspring	LOD scoreb
CB 15	var. ananassoides	Wild Brazil x Lot 520	2.88
CB 15	var. ananassoides	Pina Lisa	1.25
CB 17	var. bracteatus	Canterra	2.84
CB 17	var. bracteatus	Papuri Vaupes Colombia	2.90
CB 17	var. bracteatus	CB 30	3.89
CB 17	var. bracteatus	Pina de Castilla	2.62
CB 19	var. ananassoides	Cayenne Lot 520	3.05
CB 5	var. bracteatus	Rondon	1.43
CB 6	var. ananassoides	Bogota	18.66
CB 61	var. ananassoides	CB 32	2.11
Plot 347 (PI 56907)	var. bracteatus	Congo	2.65
Plot 347 (PI 56907)	var. bracteatus	Phu Qui	2.84
Plot 347 (PI 56907)	var. bracteatus	Mauritius	2.31
Plot 347 (PI 56907)	var. bracteatus	Cheese Pine	0.61

^aPutative parental accessions used in the present analysis. Only those with significant LOD score were listed.

^bCritical LOD (the natural logarithm of the likelihood) ratio for assignment of parentage is 2.60 at 95% confidence and 0.24 at 80% confidence.