Table 2.
Differentially expressed genes associated with anaerobic respiration and metabolism
| ID tag | Product | Fold change | Direction | Putative function |
|---|---|---|---|---|
| D11S_0205 | Cytochrome c-type protein TorC | 3.05 | Up | Trimethylamine N-oxide anaerobic respiration |
| D11S_0206 | Periplasmic nitrate reductase, diheme cytochrome | 2.94 | Up | Diheme cytochrome c subunit |
| D11S_0207 | Ferredoxin-type protein NapH | 3.36 | Up | Quinol dehydrogenase membrane component |
| D11S_0208 | Quinol dehydrogenase periplasmic component | 2.74 | Up | Nitrate respiration electron transport |
| D11S_0209 | Periplasmic nitrate reductase, large subunit | 4.92 | Up | Nitrate redutase periplasmic component |
| D11S_0210 | NapD protein | 6.69 | Up | Assembly of D11S_208 and D11S_209 |
| D11S_0303 | Anaerobic C4-dicarboxylate membrane transporter | 2.41 | Up | Anaerobic utilization of aspartate/fumarate |
| D11S_0383 | Alkylhydroperoxidase AhpD core | 4.03 | Up | Anti-oxidant protein |
| D11S_0493 | Anaerobic dimethyl sulfoxide reductase chain A | 2.26 | Up | Anaerobic terminal reductase |
| D11S_0494 | Anaerobic dimethyl sulfoxide reductase chain B | 2.23 | Up | Anaerobic terminal reductase |
| D11S_0597 | Aspartate ammonia-lyase | 6.86 | Up | Converts aspartate to fumarate |
| D11S_0810 | Fumarate reductase subunit C (Fumarate reductase) | 2.39 | Up | Anaerobic conversion of fumarate to succinate |
| D11S_0811 | Fumarate reductase iron-sulfur subunit | 2.39 | Up | Anaerobic conversion of fumarate to succinate |
| D11S_0812 | Fumarate reductase flavoprotein subunit | 3.86 | Up | Anaerobic conversion of fumarate to succinate |
| D11S_1061 | Fumarate hydratase, class II | 2.43 | Up | Reversible hydration/dehydration of fumarate to malate |
| D11S_1092 | Hydrogenase accessory protein HypB | 1.81 | Up | GTP hydrolase; assembly of hydrogenase |
| D11S_1093 | Hydrogenase expression/formation protein HypD | 1.57 | Up | Hydrogenase maturation protein |
| D11S_1376 | Hydrogenase assembly chaperone HypC/HupF | 1.88 | Up | Hydrogenase maturation protein |
| D11S_1379 | Oxaloacetate decarboxylase γ chain 3 | 4.74 | Up | Conversion of OAA to pyruvate |
| D11S_1380 | Oxaloacetate decarboxylase α subunit | 4.44 | Up | Conversion of OAA to pyruvate |
| D11S_1381 | Oxaloacetate decarboxylase β chain | 4.31 | Up | Conversion of OAA to pyruvate |
| D11S_1412 | Cytochrome c-type protein TorY | 7.66 | Up | Trimethylamine N-oxide anaerobic respiration |
| D11S_1413 | Trimethylamine-n-oxide reductase 2 | 4.67 | Up | Trimethylamine N-oxide anaerobic respiration |
| D11S_1676 | Cytochrome c peroxidase | 5.05 | Up | Metabolism of reducing equivalents from cytochrome c |
| D11S_1735 | [NiFe] hydrogenase maturation protein HypF | 2.58 | Up | Hydrogenase maturation protein |
| D11S_1736 | Electron transport protein HydN | 18.44 | Up | Electron transport from formate to hydrogen |
| D11S_1737 | Hydrogenase-4 component B | 14.93 | Up | Oxidation of hydrogen; coupled to electron transport |
| D11S_1738 | Hydrogenase-4 component B | 15.02 | Up | Oxidation of hydrogen; coupled to electron transport |
| D11S_1739 | Hydrogenase-4 component C | 10.68 | Up | Oxidation of hydrogen; coupled to electron transport |
| D11S_1740 | Hydrogenase-4 component D | 10.59 | Up | Oxidation of hydrogen; coupled to electron transport |
| D11S_1741 | Hydrogenase-4 component E | 7.95 | Up | Oxidation of hydrogen; coupled to electron transport |
| D11S_1742 | Hydrogenase-4 component F | 7.76 | Up | Oxidation of hydrogen; coupled to electron transport |
| D11S_1743 | Hydrogenase-4 component G | 5.89 | Up | Oxidation of hydrogen; coupled to electron transport |
| D11S_1744 | Hydrogenase-4 component H | 5.87 | Up | Oxidation of hydrogen; coupled to electron transport |
| D11S_1745 | Hydrogenase-4 component I | 5.4 | Up | Oxidation of hydrogen; coupled to electron transport |
| D11S_1746 | Hydrogenase-4 component J | 4.62 | Up | Oxidation of hydrogen; coupled to electron transport |
| D11S_1747 | Hydrogenase maturation peptidase Hyc | 4.79 | Up | C-terminal processing of hydrogenase |
| D11S_1748 | Formate dehydrogenase H | 10.42 | Up | Anaerobic metabolism of formate to H2 and CO2 |
| D11S_1749 | Formate dehydrogenase, α subunit | 10.0 | Up | Oxidation of formate to CO2 |
| D11S_1771 | C4-dicarboxylate membrane transporter | 1.73 | Up | Anaerobic utilization of aspartate/fumarate |
| D11S_1811 | Bifunctional acetaldehydeCoA/alcohol dehydrogenase | 2.72 | Up | Oxidation aldehydes and alcohols |
| D11S_1888 | TorCAD operon transcriptional regulatory protein | 1.86 | Up | Regulator of trimethylamine N-oxide respiration genes |
| D11S_1984 | Cytochrome c-type biogenesis protein CcmF | 3.87 | Up | Assembly of c-type cytochromes |
| D11S_1986 | NrfD protein | 11.59 | Up | Electron transfer from quinone to type c cytochromes |
| D11S_1987 | Cytochrome c nitrite reductase, Fe-S protein | 13.63 | Up | Reduction of nitrite to ammonia |
| D11S_1988 | Cytochrome c nitrite reductase, pentaheme | 17.08 | Up | Formate dependent reduction of nitrite to ammonia |
| D11S_1989 | Nitrite reductase (cytochrome; ammonia-forming) | 18.43 | Up | Reduction of nitrite to ammonia |
| D11S_1993 | Cytochrome c-type biogenesis protein CcmH | 1.57 | Up | Biogenesis of cytochrome c |
| D11S_1994 | Thiol-disulfide interchange protein | 2.04 | Up | Biogenesis of cytochrome c |
| D11S_1995 | Cytochrome c-type biogenesis protein CcmF | 2.39 | Up | Assembly of c-type cytochromes |
| D11S_1996 | Cytochrome c-type biogenesis protein CcmE | 2.44 | Up | Heme chaperone; assembly of c-type cytochromes |
| D11S_1997 | Heme exporter protein D (CcmD) | 2.65 | Up | Heme transporter |
| D11S_1998 | CcmC | 3.15 | Up | Cytochrome c biosynthesis |
| D11S_1999 | Heme exporter protein CcmB | 2.69 | Up | Heme exporter; cytochrome c biosynthesis |
| D11S_2000 | Heme ABC exporter, ATP-binding protein CcmA | 3.3 | Up | Heme exporter; cytochrome c biosynthesis |
| D11S_2128 | Anaerobic ribonucleoside-triphosphate reductase | 2.7 | Up | Reduction of CTP to dCTP |