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. 2015 Nov 27;8:728. doi: 10.1186/s13104-015-1687-6

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© Mohammed and Cormican. 2015

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Maximum-likelihood phylogenetic tree of S. Typhimurium strains. The tree is based on SNPs determined from the whole genome sequence (excluding prophage regions and phage remnant). Tree was inferred by using a general time-reversible (GTR) model with a gamma distribution. Bootstrap support values, given as a percentage of 1000 replicates, are shown on the branches. SNPs supporting each branch are displayed in red