Table 1.
Standard contiguity metrics
| Name | #scaff | #scaff > 1000 | N50 | max_scf | asm_lgth | asm_lgth >1000 |
|---|---|---|---|---|---|---|
| Chr1-7 | 15 | 15 | 3706655 | 4993496 | 17319971 | 17319971 |
| Chr1-4 | 12 | 12 | 3706655 | 4993496 | 14763326 | 14763326 |
| soapdenovo | 66606 | 396 | 263103 | 1117059 | 25625475 | 13038098 |
| allpaths | 352 | 349 | 610180 | 1845683 | 13885397 | 13882423 |
| abyss | 6523 | 1061 | 46286 | 581122 | 18806852 | 18097355 |
| HGAP | 308 | 308 | 147223 | 776319 | 14719721 | 14719721 |
| FALCON | 410 | 405 | 30567 | 152911 | 10731982 | 10728849 |
| AHA | 241 | 241 | 201733 | 758433 | 15105135 | 15105135 |
| pacBioToCA | 1579 | 1579 | 157083 | 692841 | 17014896 | 17014896 |
Columns from left to right: name of the assembly, number of scaffolds, number of scaffolds after removing those under 1 kbp, N50, N80, the longest scaffold, assembly length, assembly length after removing scaffolds under 1 kbp