Table 7.
NanoString targets (18) tested confirmed RNA-Seq determined fold changes following 20, 40 and 60 min of FL exposure.
| Exposure | Ensembl ID | Gene Name | NanoString | RNA-Seq |
|---|---|---|---|---|
|
| ||||
| 20 min FL | ENSXMAT00000002257 | bhlhe40 | −2.9 | −2.0 |
| ENSXMAT00000002359 | nr1d4b | 3.4 | 2.5 | |
| ENSXMAT00000015815 | ybx2 | 2.6 | 2.2 | |
| ENSXMAT00000017010 | clock | 2.7 | 1.9 | |
| ENSXMAT00000000471 | adrb2b | 3.0 | 2.9 | |
| ENSXMAT00000008690 | klhl38b | 3.6 | 4.9 | |
| ENSXMAT00000009163 | tgm8* | 11.8 | 3.4 | |
| ENSXMAT00000014172 | snca | 2.9 | 2.0 | |
| ENSXMAT00000016248 | per2 | 5.8 | 3.5 | |
| ENSXMAT00000016798 | map2k6 | −2.5 | −2.0 | |
|
| ||||
| 40 min FL | ENSXMAT00000009327 | cry2a | 2.3 | 2.0 |
| ENSXMAT00000015815 | ybx2 | 2.2 | 2.1 | |
| ENSXMAT00000017010 | clock | 2.5 | 2.1 | |
| ENSXMAT00000016248 | per2 | 1.9 | 2.8 | |
|
| ||||
| 60 min FL | ENSXMAT00000004757 | ccnf | −2.0 | −2.2 |
| ENSXMAT00000014334 | ccnb2 | −2.1 | −2.8 | |
| ENSXMAT00000008371 | kpna2 | −2.1 | −2.6 | |
| ENSXMAT00000011193 | numa1 | −2.0 | −2.4 | |
| ENSXMAT00000014517 | arhgap19 | −1.9 | −2.1 | |
| ENSXMAT00000015815 | ybx2 | 2.1 | 2.3 | |
| ENSXMAT00000017010 | clock | 2.0 | 3.9 | |
| ENSXMAT00000003968 | pif1 | −3.9 | −3.3 | |
| ENSXMAT00000008690 | klhl38b | 3.8 | 5.2 | |
| ENSXMAT00000009163 | tgm8 | 6.6 | 3.5 | |
| ENSXMAT00000016248 | per2 | 7.0 | 4.4 | |
| ENSXMAT00000016798 | map2k6 | −2.3 | −2.0 | |
| ENSXMAT00000019435 | xpc | 3.6 | 2.2 | |
*
tgm8 confirmed the RNA-Seq determined fold change in direction but did not correlate in magnitude and was therefore not included Figure 5.