Table 6. Summary of the significant (p≤0.001) interactions detected for lint yield and yield components by permutation tests of all possible two loci combinations.

Trait	Interaction	S1a	N1a	Common in F2: 3
Lint yield	Positive pairs	97	93	1
	AA	69	62	0
	AD/DA	48	34	0
	DD	6	19	0
Bolls/plant	Positive pairs	77	211	1
	AA	56	149	0
	AD/DA	29	100	0
	DD	8	12	0
Boll weight	Positive pairs	77	60	0
	AA	53	34	0
	AD/DA	30	36	0
	DD	8	4	0
Lint percent	Positive pairs	98	61	6
	AA	59	29	2
	AD/DA	51	38	2
	DD	12	10	0