Table 1.
The HOMIM probes that were prevalent from the DNA extracts from the clinical plaque samples on visit 2. National Center for Biotechnology Information Taxonomy ID are listed (NA=not applicable at time of publication, ‘-‘ represents cluster probes that are not associated with a specific taxa).
| HOMIM probe ID | Associated NCBI # |
|---|---|
| Positive in 70% or more of the DNA extracts. Asterisk (*) denotes positive in all ten samples | |
| *Actinomyces georgiae HOT-617_AG01 | 52768 |
| Bacteroidetes[G-3] spp. HOT-281,365_AG17 | NA |
| *Bergeyella sp. HOT-322_AD84 | NA |
| Campylobacter showae HOT-763_X35, HOT-763_W36 | 204 |
| Campylobacter curvus HOT-580 / Campylobacter rectus HOT-748 | 200, 203 |
| Campylobacter concisus HOT-575 / Campylobacter rectus HOT-748_T86 | 199, 203 |
| Campylobacter concisus HOT-575 / Campylobacter rectus HOT-748_X36 | 199,203 |
| Capnocytophaga granulosa HOT-325_AG23 | 45242 |
| Capnocytophaga leadbetteri HOT-329_O08 | NA |
| Capnocytophaga ochracea HOT-700 / Capnocytophaga spp. HOT-323,326,864_Y83 | 1018,NA,NA, 742458 |
| Capnocytophaga sputigena HOT-775_AC15 | 1019 |
| Cardiobacterium hominis HOT-633_O97 | 2718 |
| Fusobacterium Cluster_AE01 | |
| *Haemophilus parainfluenzae HOT-718_W79 | 729 |
| Neisseria Cluster_O45 | |
| Porphyromonas sp. HOT-279_Q93 | NA |
| *Propionibacterium propionicum HOT-739_AB72 | 1750 |
| Streptococcus constellatus HOT-576 / Streptococcus intermedius HOT-644_F48 | 76860, 1338 |
| Streptococcus mitis bv2 HOT-398_AH36 | NA |
| Streptococcus mitis bv2 HOT-398 / Streptococcus sp. HOT-069_Q64 | NA |
| *Streptococcus oralis HOT-707/ Streptococcus sp. HOT-064_F46 | 1303 |
| Eubacterium[11][G-7] yurii HOT-377 / Peptostreptococcaceae[11][G-7] sp.HOT-106_W84 | 39498, NA |
| Lautropia mirabilis HOT-022_X44 | 47671 |
| Corynebacterium matruchotii HOT-666_AG29 | 43768 |
| Fusobacterium periodonticum HOT-201_R20 | 860 |
| Rothia dentocariosa HOT-587 / Rothia mucilaginosa HOT-681_E52 | 2047, 43675 |
| Gemella haemolysans HOT-626_AG51 | 1379 |
| Streptococcus australis HOT-073_AH32 | 113107 |
| Campylobacter concisus HOT-575_X33 | 199 |
| Dialister invisus HOT-118_AG33 | 218538 |
| Mycoplasma salivarium HOT-754_AD10 | 2124 |
| Capnocytophaga gingivalis HOT-337_X23 | 1017 |