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. 2015 Jul 29;6:46–47. doi: 10.1016/j.gdata.2015.07.023

Table 2.

Total raw reads, sequenced base-pairs, N50 value of WGS assembly and SNPs identified from P. luminescens NBAII H75HRPL105, P. luminescens NBAII HiPL101, and P. luminescens NBAII HbPL105. *Sequenced base pairs calculated after trimming of Illumina adapters following FASTQC analysis. N50 values calculated from WGS de novo assemblies using FASTQC-trimmed reads. **Sequence variants called from reference-guided assemblies with all P. luminescens strains mapped against P. luminescens subsp. Laumondii TT01 reference genome (NCBI accession NC_005126.1). SNPs—single nucleotide polymorphism. MNP—multiple nucleotide polymorphism. Indel—insertion and/or deletion mutations.

Photorhabdus luminescens NBAII
H75HRPL105
Photorhabdus luminescens NBAII
HiPL101
Photorhabdus luminescens NBAII
HbPL105
Total reads 2,604,823 2,790,255 2,463,266
Total bp* 189,591,052 203,431,557 214,900,170
GC content 42.5% 42.5% 42.5%
N50 22,874 27,588 20,747
Mean contig length 8430 7454 6677
SNPs, MNPs, indels** 639 2179 6549