Table 2.
HIV-1C V1C5 clusters with 5+ members, relaxed bootstrap threshold between 0.70 & 0.80
| Cluster ID | Members per cluster | Mochudi- unique, or mixed cluster |
ML bootstrap support |
Internode Certainty* |
The most recent HIV transmission |
Time to the most recent transmission |
Acute, or historic sub- epidemic** |
||
|---|---|---|---|---|---|---|---|---|---|
| Total | From Mochudi |
From outside Mochudi |
|||||||
| c16_n17 | 17 | 14 | 3 | mixed | 0.76 | 0.84 | Jan 2005 | 7.0 | historic |
| c17_n22 | 22 | 18 | 4 | mixed | 0.70 | 0.38 | May 2010 | 1.9 | acute# |
| c19_n07 | 7 | 5 | 2 | mixed | 0.71 | 0.76 | Dec 2006 | 5.1 | historic |
| c20_n08 | 8 | 7 | 1 | mixed | 0.78 | 0.61 | Sep 2001 | 10.5 | historic |
| c21_n08 | 8 | 7 | 1 | mixed | 0.72 | 0.48 | Jun 2007 | 4.7 | acute# |
*
most prevalent conflicting bipartitions
**
HIV sub-epidemic with (acute), or without (historic) HIV transmission over last 5 years
#
Not supported by the BF values