Table 1.
Indices of population genetic diversity for Aedes aegypti in Yogyakarta, Indonesia
| Microsatellites | nuclear SNPs | mtDNA | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Site | Hamlet | Life stage/season | n | Allelic richness | H E | F IS | n | H E | F IS | n | π | Hd |
| 1 | Kali Tirto | L/wet | 52 | 3.99 | 0.532 | 0.020 | - | - | - | - | - | - |
| A/wet | 21 | 3.87 | 0.506 | 0.138 | - | - | - | - | - | - | ||
| 2 | Banguntapan | L/wet | 79 | 4.54 | 0.614 | 0.069 | - | - | - | - | - | - |
| L/dry | 34 | 5.81 | 0.597 | 0.055 | 9 | 0.210 | 0.157 | 19 | 0.0009 | 0.713 | ||
| A/wet | 27 | 5.31 | 0.607 | −0.010 | - | - | - | - | - | - | ||
| 3 | Singosaren | L/wet | 23 | 4.44 | 0.560 | 0.132 | - | - | - | - | - | - |
| L/dry | 36 | 5.26 | 0.553 | 0.169 | 5 | 0.209 | −0.011 | 15 | 0.0013 | 0.819 | ||
| A/wet | 30 | 5.05 | 0.598 | 0.083 | - | - | - | - | - | - | ||
| 4 | Timbulharjo | L/wet | 16 | 3.81 | 0.569 | 0.005 | - | - | - | - | - | - |
| 5 | Patalan | L/wet | 17 | 4.25 | 0.549 | 0.164 | - | - | - | - | - | - |
| A/wet | 23 | 4.64 | 0.547 | 0.035 | - | - | - | - | - | - | ||
| 6 | Nogotirto | L/wet | 34 | 4.13 | 0.583 | 0.044 | 10 | 0.205 | 0.077 | 6 | 0.0044 | 0.800 |
| L/dry | 37 | 5.14 | 0.593 | 0.073 | 12 | 0.207 | 0.051 | 9 | 0.0012 | 0.694 | ||
| A/wet | 27 | 4.30 | 0.522 | 0.030 | - | - | - | - | - | - | ||
| 7 | Trihanggo | L/wet | 46 | 3.89 | 0.522 | 0.055 | 16 | 0.214 | 0.051 | 10 | 0.0012 | 0.533 |
| L/dry | 36 | 5.17 | 0.523 | 0.035 | 12 | 0.217 | 0.107 | 9 | 0.0007 | 0.250 | ||
| 8 | Trihanggo | L/wet | 30 | 3.86 | 0.547 | 0.085 | 20 | 0.227 | 0.119 | 8 | 0.0013 | 0.464 |
| L/dry | 34 | 5.47 | 0.555 | 0.065 | 20 | 0.221 | 0.143 | 8 | 0.0016 | 0.667 | ||
| 9 | Pandowo Harjo | L/wet | 10 | 4.00 | 0.561 | 0.135 | - | - | - | - | - | - |
| 10 | Widodo Martani | L/wet | 18 | 3.82 | 0.559 | 0.024 | - | - | - | - | - | - |
| A/dry | 24 | 3.98 | 0.548 | 0.029 | - | - | - | - | - | - | ||
| 11 | Cokrodiningratan | L/dry | 40 | 5.54 | 0.538 | −0.005 | 19 | 0.226 | 0.094 | 9 | 0.0021 | 0.972 |
| 12 | Tegal Panggung | L/dry | 40 | 5.47 | 0.543 | 0.039 | 20 | 0.227 | 0.102 | 13 | 0.0005 | 0.641 |
| 13 | Mantrijeron | L/dry | 40 | 5.44 | 0.574 | 0.025 | 20 | 0.230 | 0.127 | 17 | 0.0004 | 0.721 |
Indices for microsatellites, nuclear-genome wide SNPs and mitochondrial DNA sequences. n sample size, L larvae, A adults, season: wet and dry; H E expected heterozygosity, F IS inbreeding/fixation index, π nucleotide diversity, H d haplotype diversity