Table 2. Ancestry-biased CNVs in Xinjiang populations.
| CNVRa | Ancestry-biased FST | Populations | RefSeq genes |
|---|---|---|---|
| chr1:(106002162_106012754)_(106024798_106028674)del | 0.065 | KZK | |
| chr1:(210071062_210081613)_(210083984_210086552)del | 0.07 | KZK | |
| chr2:(180061655_180067192)_(180079144_180083591)del | 0.076 | UIG | SESTD1 |
| chr3:(98937784_98944458)_(98949421_98950964)del | 0.076 | KGZ | |
| chr5:(97930840_97933671)_(97944946_97954791)del | 0.078,0.058,0.053 | KGZ,KZK,UIG | |
| chr5:(151514171_151515386)_(151520497_151521211)del | 0.052 | KGZ | |
| chr6:(32587457_32593021)_(32602107_32602269)del | 0.06 | UIG | |
| chr6:(65710729_65711399)_(65713792_65717384)del/dup | 0.074,0.091 | KZK,UIG | EYS |
| chr6:(165724052_165727817)_(165731928_165734652)del | 0.075 | UIG | |
| chr7:(6838724_6854110)_(6864083_6864247)del/dup | 0.153,0.118 | KZK,UIG | C7orf28B |
| chr7:(64554240_64565585)_(64595698_64637128)del | 0.1 | KGZ | |
| chr7:(143213351_143216729)_(143568059_143572166)dup | 0.061 | KGZ | CTAGE6,FAM115A,FAM115C,LOC154761,LOC441294 |
| chr8:(2133375_2141462)_(2393160_2395110)del/dup | 0.069 | KZK | |
| chr9:(29091097_29094549)_(29097680_29100799)del/dup | 0.065 | KGZ | |
| chr9:(68183981_68186051)_(68188547_68209916)del/dup | 0.069 | UIG | |
| chr9:(135933784_135934431)_(135965662_135967602)del/dup | 0.057 | KZK | CEL,CELP |
| chr10:(107056279_107057038)_(107059170_107062476)del/dup | 0.052 | KZK | |
| chr10:(114111348_114112075)_(114116839_114118417)dup | 0.085 | UIG | |
| chr11:(5519684_5520062)_(5523593_5525152)del | 0.064 | KZK | |
| chr16:(69988386_70024589)_(70272708_70277632)del/dup | 0.152,0.068 | KGZ,UIG | CLEC18C,PDPR,PDXDC2 |
| chr17:(43574921_43585756)_(43650957_43655090)del/dup | 0.055 | KGZ | LRRC37A4 |
| chr21:(23646523_23651134)_(23674393_23674592)del | 0.262,0.093 | KGZ,UIG | |
| chr22:(22307519_22315089)_(23258615_23258909)del/dup | 0.111,0.069,0.130 | KGZ,KZK,UIG | GGTLC2,LOC96610,POM121L1P,PRAME,TOP3B,VPREB1,ZNF280A,ZNF280B |
Abbreviations: CNVR, copy number variation region; KGZ, Kirgiz; KZK, Kazakh; UIG, Uyghur.
a
The coordinates were mapped to reference genome assembly hg19. The CNV is in the following format: chromosome:(outer-start_inner-start)-(inner-end_outer-end)CNV-type.