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. Author manuscript; available in PMC: 2016 May 18.
Published in final edited form as: Nat Genet. 2015 Nov 9;47(12):1415–1425. doi: 10.1038/ng.3437

Table 3.

Motif-altering credible set variants in FOXA2 sites.

Locus Index variant Motif-altering variant Chr Position (b37) Posterior probability (πC) Motif-altering allele Chromatin state
MTNR1B rs10830963 rs10830963 11 92708710 0.998 G Islet-enhancer, HepG2-enhancer
TCF7L2 rs7903146 rs7903146 10 114,758,349 0.78 T Islet-enhancer
SLC30A8 rs13266634 rs13266634 8 118,184,783 0.29 T Islet-enhancer
CDKN2B rs10811660 rs10811660 9 22,134,068 0.24 A Islet-enhancer
CDC123 rs11257658 rs11257655 10 12,307,894 0.21 T Islet-enhancer, HepG2-enhancer
JAZF1 rs1513272 rs849133 7 28,192,280 0.042 T Islet-enhancer
KCNQ1 rs2283220 rs231907 11 2,752,130 0.031 T HepG2-enhancer
FTO rs9927317 rs9940128 16 53,800,754 0.027 G Islet-enhancer, HepG2-enhancer
FTO rs9927317 rs9939973 16 53,800,568 0.025 G Islet-enhancer, HepG2-enhancer
KCNQ1 rs458069 rs78688069 11 2,752,183 0.0006 A HepG2-enhancer
KCNQ1 rs458069 rs190728714 11 2,813,084 0.00042 G Islet-enhancer
DGKB rs10276674 rs7798360 7 15,055,972 0.00005 G -

Chr: chromosome.