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. 2015 Dec 1;10:117. doi: 10.1186/s40793-015-0106-x

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© Deng et al. 2015

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Circular representation of the P. chlororaphis UFB2 genome compared with six sequenced Pseudomonas whole genomes. Rings from inside to outside: (1) Scale, (2) GC content (navy), (3) GC skew (purple), (4) BLAST comparison with P. syringae pv. syringae B728a (deep pink), (5) BLAST comparison with P. putida KT2440 (pink), (6) BLAST comparison with P. chlororaphis strain PA23 (cyan), (7) BLAST comparison with P. aeruginosa PAO1 (violet), (8) BLAST comparison with P. fluorescens Pf0-1 (skyblue), (9) BLAST comparison with P. sp. UW4 (yellow), (10) Coding sequences of P. chlororaphis UFB2 genome (dark cyan), (11) Gene islands (medium purple), (12) rRNA genes (orange), tRNA genes (dark green) and ncRNA (red). BLASTn comparison of genomes was visualized by BRIG [53] and UFB2 genome the image was generated with Circos [54]