Table 1.
MIGS ID | Property | Term | Evidence codea |
---|---|---|---|
Classification | Domain Bacteria | TAS [56] | |
Phylum Proteobacteria | TAS [57] | ||
Class Gammaproteobacteria | TAS [58, 59] | ||
Order Pseudomonadales | TAS [19, 60] | ||
Family Pseudomonadaceae | TAS [19, 61] | ||
Genus Pseudomonas | TAS [19, 61–63] | ||
Species Pseudomonas chlororaphis | TAS [19, 64, 65] | ||
strain: UFB2 | NAS | ||
Gram stain | negative | TAS [66] | |
Cell shape | Rod | TAS [66] | |
Motility | Motile | TAS [66] | |
Sporulation | None | NAS | |
Temperature range | Mesophilic | IDA | |
Optimum temperature | 33 °C | IDA | |
pH range; Optimum | not determined | IDA | |
Carbon source | D-glucose, D-galactose, L-rhamnose, D-mannitol, D-raffinose, D-fructose, D-arabinose, 2D-ribose, L-arabinose, L-xylose, D-xylose. | TAS [66] | |
MIGS-6 | Habitat | Soil | NAS |
MIGS-6.3 | Salinity | not determined | IDA |
MIGS-22 | Oxygen requirement | Aerobic | NAS |
MIGS-15 | Biotic relationship | free-living/Rhizospheric | NAS |
MIGS-14 | Pathogenicity | non-pathogen | IDA |
MIGS-4 | Geographic location | Mississippi, USA | IDA |
MIGS-5 | Sample collection | 2011 | IDA |
MIGS-4.1 | Latitude | 34.1 N | IDA |
MIGS-4.2 | Longitude | 90.6 W | IDA |
MIGS-4.4 | Altitude | 40 M | IDA |
aEvidence codes - IDA Inferred from Direct Assay, TAS Traceable Author Statement (i.e., a direct report exists in the literature), NAS Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [67]