Table 3.

List of the TRs predicted to orchestrate the transcriptional response during N starvation

Stage	Name	Description	Timestamp (min)	Trend	Predicted regulated modules
Early	Cre13.g573000	SET domain methyltransferase	12	Down	40, 113, 162, 197, 127
	BLZ8	Basic region leucine zipper	13	Down	105, 121
	RWP11	RWP-RK TF	15	Up	150
	Cre17.g746547	bZIP TF	15	Down	105, 121
Mid	CGL86	Nuclear inhibitor of protein phosphatase-1	26	Down	129, 130, 99, 172, 13, 45, 82, 148
	NAT11	Acetyltransferase (GNAT)	30	Down	129
	RWP1	RWP-RK domain protein	36	Up	130, 99, 13, 45, 82, 148
	NAT1	Acetyltransferase (GNAT)	37	Down	200, 178, 93, 174
	NRR1	SBP domain	44	Up	82, 67
	RWP4	RWP-RK domain-containing protein	48	Up	193, 98, 35, 37, 72, 170, 45, 142, 175, 59, 99, 53, 87, 27, 95
	GSM1	Gamete-specific minus 1	50	Up	193, 98, 35, 37, 166, 172, 45, 175, 99, 59, 67, 53, 54, 87, 27, 149
	Cre12.g523000	Zinc finger CCCH domain containing protein	62	Up	149, 193, 98, 35, 37, 102, 170, 172, 45, 142, 175, 99, 59, 67, 53, 54, 87, 185, 27, 211, 95
Late	CGL107	Histone-like transcription factor (CBF/NF-Y)	109	Up	193, 8, 9, 141, 50, 24, 154, 59, 92, 158
	Cre09.g386753	DNA binding protein S1FA	109	Down	98, 35, 166, 172, 175, 67, 149, 27
	NAB1	Nucleic acid binding protein	146	Down	33, 34, 133, 104, 76, 144, 136, 210, 21, 151, 57, 186
	NAT31	Acetyltransferase (GNAT)	371	Up	104, 136, 133
	Cre03.g152150	Zinc finger C2H2 type domain	418	Down	129, 13

Seventeen differentially expressed TRs during N starvation have a predicted significant influence on at least one transcriptional module. TR name and description, first time point of differential expression (timestamp) and predicted influenced modules are indicated