Table 1. Number of D. galliinae samples classified into each haplogrop, sub-haplogroup and haplotype based on the nucleotide sequences of COI and 16S rRNA, and sequence type of ITS.
| COI | 16S rRNA Haplotypec) | ITS | Total | ||||
|---|---|---|---|---|---|---|---|
| Haplogroupa) | Sub-haplogroup | Haplotypeb) | Type I | Type II | ND | ||
| A | AJ1 | AJ1.1 | AJ1.1 | 5 | 0 | 19 | 24 |
| AJ1.6 | 0 | 0 | 2 | 2 | |||
| AJ1.10 | 1 | 0 | 0 | 1 | |||
| AJ1.11 | 0 | 0 | 2 | 2 | |||
| AJ1.12 | 0 | 0 | 1 | 1 | |||
| AJ1.2 | AJ1.1 | 1 | 0 | 0 | 1 | ||
| AJ1.3 | AJ1.1 | 1 | 0 | 0 | 1 | ||
| AJ1.4 | AJ1.1 | 0 | 0 | 1 | 1 | ||
| AJ1.5 | AJ1.1 | 0 | 0 | 1 | 1 | ||
| AJ1.6 | AJ1.1 | 0 | 0 | 2 | 2 | ||
| AJ1.7 | AJ1.3 | 0 | 1 | 0 | 1 | ||
| AJ1.8 | AJ1.1 | 1 | 0 | 0 | 1 | ||
| AJ1.9 | AJ1.1 | 1 | 0 | 12 | 13 | ||
| AJ1.5 | 0 | 0 | 1 | 1 | |||
| AJ1.10 | AJ1.1 | 0 | 0 | 1 | 1 | ||
| AJ1.11 | AJ1.1 | 1 | 0 | 1 | 2 | ||
| AJ1.12 | AJ1.1 | 0 | 0 | 1 | 1 | ||
| AJ1.13 | AJ1.1 | 0 | 0 | 1 | 1 | ||
| AJ1.14 | AJ1.6 | 0 | 1 | 1 | 2 | ||
| AJ2 | AJ2.1 | AJ2.1 | 7 | 0 | 3 | 10 | |
| AJ2.2 | 0 | 0 | 1 | 1 | |||
| AJ2.2 | AJ2.4 | 0 | 1 | 0 | 1 | ||
| B | BJ1 | BJ1.1 | BJ1.1 | 0 | 0 | 1 | 1 |
| BJ1.3 | 1 | 0 | 0 | 1 | |||
| BJ1.2 | BJ1.1 | 1 | 1 | 0 | 2 | ||
| BJ1.3 | BJ1.1 | 0 | 1 | 0 | 1 | ||
| BJ1.4 | BJ1.1 | 0 | 0 | 1 | 1 | ||
| BJ1.5 | BJ1.1 | 0 | 0 | 1 | 1 | ||
| BJ1.6 | BJ1.1 | 0 | 0 | 1 | 1 | ||
| BJ2 | BJ2.1 | BJ2.1 | 4 | 0 | 10 | 14 | |
| BJ2.3 | 0 | 0 | 1 | 1 | |||
| BJ2.5 | 0 | 1 | 0 | 1 | |||
| BJ2.2 | BJ2.1 | 0 | 0 | 1 | 1 | ||
| BJ2.3 | BJ2.1 | 0 | 0 | 1 | 1 | ||
| BJ2.4 | BJ2.6 | 0 | 1 | 0 | 1 | ||
| BJ2.5 | BJ2.1 | 0 | 0 | 1 | 1 | ||
| BJ2.6 | BJ2.1 | 0 | 0 | 2 | 2 | ||
| ND | ND | ND | AJ1.1 | 0 | 0 | 81 | 81 |
| AJ1.2 | 0 | 0 | 2 | 2 | |||
| AJ1.4 | 0 | 0 | 1 | 1 | |||
| AJ1.6 | 0 | 0 | 1 | 1 | |||
| AJ1.7 | 0 | 0 | 1 | 1 | |||
| AJ1.8 | 0 | 0 | 1 | 1 | |||
| AJ1.9 | 0 | 0 | 1 | 1 | |||
| AJ1.11 | 0 | 0 | 3 | 3 | |||
| AJ2.1 | 0 | 0 | 2 | 2 | |||
| AJ2.3 | 0 | 0 | 1 | 1 | |||
| AJ2.5 | 0 | 0 | 1 | 1 | |||
| BJ1.1 | 0 | 0 | 19 | 19 | |||
| BJ1.2 | 0 | 0 | 2 | 2 | |||
| BJ2.1 | 1 | 1 | 18 | 20 | |||
| BJ2.2 | 0 | 0 | 1 | 1 | |||
| BJ2.4 | 0 | 0 | 1 | 1 | |||
| Total | 28 haplotypes | 26 haplotypes | 25 | 8 | 206 | 239 | |
ND: Not determined. a) Haplogroups reported by Oines and Brannstrom [8]. b) Haplotypes were determined based on the nucleotide sequences of 643-bp of COI gene. c) Haplotypes were determined based on the nucleotide sequences of 397-bp of 16S rRNA.