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. Author manuscript; available in PMC: 2015 Dec 2.
Published in final edited form as: J Mol Biol. 2006 Feb 24;358(3):882–904. doi: 10.1016/j.jmb.2006.02.015

Table 2.

Fragment cut definitions used in this work

Type Computational implementation Physical analogy
Pluck Remove peptide bond only Reconstituted fragment pair
Split Remove peptide bond and all cross-linking H-bonds Physical separation of fragments
Track Remove only cross-linking H-bonds Hierarchical protein unfolding via H-bond unzipping