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. Author manuscript; available in PMC: 2015 Dec 2.
Published in final edited form as: Biopolymers. 2004 Sep;75(1):1–31. doi: 10.1002/bip.20102

Table II.

A List of all Model Parametersa

Parameter sCT(8–32)
YGG-3V
Model I
Model II
Model I
Model II
0% HIFP 20% HIFP 0% HIFP 20% HIFP 0% HIFP 20% HIFP 0% HIFP 20% HIFP
Vh −2.84 −3.16 −2.84 −2.20 −3.04 −3.37 −2.87 −2.24
δh −0.0212 −1.19 0.763 0.552 0.0541 −1.11 0.731 0.520
Va 0 0 0 0 0 0 0 0
δa 1.39 1.39 2.25 2.25 1.67 1.67 2.24 2.24
Vc −0.579 2.00 1.14 1.51 0.597 2.02 1.08 1.46
δc 3.19 2.69 4.10 3.08 3.52 3.01 4.10 3.07
Uccc 0 0 0 0
γccc 2.92 2.92 2.92 2.92
Ucac −2.34 −2.34 −2.34 −2.34
γcac 2.76 2.76 2.76 2.76
Uaca −2.83 −2.83 −2.83 −2.83
γaca 2.15 2.15 2.15 2.15
Uaaa −4.64 −4.64 −4.64 −4.64 −4.64 −4.64 −4.64 −4.64
γaaa 2 2 2 2 2 2 2 2
Uo −3.63 −3.32 −3.27 −3.21 −3.63 −3.32 −3.27 −33.21
a

The parameter Va is fixed to zero as an arbitrary energy reference. The parameters δa, Uo, Uxyz, γxyz are fixed to the values given in the table, independent of HFIP concentration. The value of ∞ for Uxyz indicates that such a H-bond is not allowed to form, and dashes are used for γxyz whenever the H-bond is disallowed. In each model, all slope parameters are constrained to be the same for both polypeptides.