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. 2015 Dec 2;10(12):e0143481. doi: 10.1371/journal.pone.0143481

Table 1. Descriptive statistics for each of the four cpDNA and two nDNA regions and the concatenated datasets, including the number and proportion of excluded sites, missing data, variable sites and parsimony-informative sites.

DNA region Alignment length Excluded sites Missing data (%) Variable characters (%) Parsimony-informative characters (%)
Entire dataset Ingroup Entire dataset Ingroup Entire dataset Ingroup
Chloroplast DNA data
matK 831 0 6.5 13.3 254 (30.6) 16 (1.9) 146 (17.6) 9 (1.1)
trnL-F 877 98 7.5 13.7 255 (29.1) 29 (3.3) 120 (13.7) 12 (1.4)
ndhF 2057 0 11.3 7.6 764 (37.1) 61 (3.0) 473 (23.0) 34 (1.7)
ycf1 2109 0 46.8 8.4 558 (26.5) 68 (3.2) 503 (23.9) 35 (1.7)
 Combined data 5874 98 22.8 9.6 1831 (31.2) 174 (3.0) 1242 (21.1) 90 (1.5)
Nuclear DNA data
AP3 602 0 73.3 34.5 160 (26.6) 42 (7.0) 113 (18.8) 14 (2.3)
phyA 882 0 82.8 45.1 72 (8.2) 21 (2.4) 11 (1.2) 9 (1.0)
 Combined data 1484 0 79.0 40.8 232 (15.6) 63 (4.2) 124 (8.4) 23 (1.5)
Combined chloroplast and nuclear data
7358 98 34.1 15.9 2063 (28.0) 237 (3.2) 1366 (18.6) 113 (1.5)