Table 1. Data collection and refinement statistics on the apo and complex structures of TSVZV.
Apo TSVZV (4XSE) | TSVZV+dUMP (4XSD) | TSVZV+BVDUP (4XSC) | |
---|---|---|---|
Data Collection | |||
Beamline | AS MX1 | AS MX1 | AS MX1 |
Wavelength (Å) | 0.9537 | 0.9537 | 0.9537 |
Resolution Range (Å) | 29.7–3.1 (3.1–3.2) a | 30.0–2.9 (2.9–3.0)b | 30.0–2.9 (2.9–3.0) b |
Space group | p32 | p32 | p32 |
Unit cell | 153.4 Å 153.4 Å 89.2 Å | 150.2 Å 150.2 Å 89.2 Å | 149.5 Å 149.5 Å 89.0 Å |
90.0° 90.0° 120.0° | 90.0° 90.0° 120.0° | 90.0° 90.0° 120.0° | |
Total reflections | 155476 | 1195011 | 94756 |
Unique reflections | 42243 | 49612 | 46238 |
I/I(σ) | 8.5 (2.4) a | 19.8 (3.9) b | 8.1 (1.9) b |
Multiplicity | 3.7 (3.4) a | 5.5 (5.2) b | 1.5 (1.5) b |
Completeness (%) | 99.2 (97.5) a | 100.0 (99.9) b | 96.2 (95.3) b |
Rmerge c (%) | 12.7 (47.5) a | 6.9 (38.0) b | 9.7 (40.3) b |
Refinement | |||
Rfactor d (%) | 23.8 | 24.0 | 19.6 |
Rfree e (%) | 26.8 | 28.0 | 23.5 |
Protein residues | 1116 | 1081 | 1244 |
Solvent | 0 | 9 | 30 |
Ligands | 4 phosphate ions | 4 dUMP | 4 BVDUP |
4 1PE | |||
RMSD bonds (Å) | 0.5 | 0.0045 | 0.002 |
RMSD angles (°) | 1.134 | 0.882 | 0.585 |
Ramachandran favored (%) | 95 | 96 | 94.4 |
Ramachandran allowed (%) | 5 | 4 | 5.1 |
Ramachandran outliers (%) | 0 | 0 | 0.5 |
Rotamer outliers (%) | 4.4 | 6.4 | 0.8 |
a The values in the parentheses are for the highest resolution shell (3.1–3.2 Å).
b The values in the parentheses are for the highest resolution shell (2.9–3.0 Å).
c , where I i is the ith intensity measurement of reflection hkl, Ī(hkl) is the mean intensity measurement of the symmetry related or replicated reflections of the unique reflection hkl.
d , where F obs and F calc are the observed and calculated structure factors respectively.
e Rfree is equivalent to Rfactor but 5% of the measured reflections have been excluded from refinement and set aside for cross validation.