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. Author manuscript; available in PMC: 2015 Dec 3.
Published in final edited form as: Nat Chem Biol. 2015 Feb 9;11(3):221–228. doi: 10.1038/nchembio.1739

Table 1. Peptide designs.

Names, sequences, mean residue ellipticities at 222 nm (MRE222) and 5 °C, corresponding percent helicities, and midpoints of thermal denaturation curves (Tm) for the peptides used in this study. Conditions: phosphate buffered saline (PBS, 137 mM NaCl), pH 7.4, and 100 μM peptide concentration. The purity and identities of the peptides were confirmed by HPLC and MALDI-TOF mass spectrometry (Supplementary Figs. 1 – 27).

Peptide Name Sequence1 MRE222 Fraction
Helix (%)
Tm (°C)

(E2K2)6 Ac–GEEKKEEKKEEKKEEKKEEKKEEKKGYY–NH2 813 −1
(EK)12 AC–GEKEKEKEKEKEKEKEKEKEKEKEKGW–NH2 −8,136 22
(KE)12 AC–GKEKEKEKEKEKEKEKEKEKEKEKEGW–NH2 −4,180 12

(E4K4)4 AC–GEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKKGW–NH2 −36,454 94
(E4K4)3 AC–GEEEEKKKKEEEEKKKKEEEEKKKKGW–NH2 −27,885 74
(E4K4)2 AC–GEEEEKKKKEEEEKKKKGW–NH2 −23,374 65
(E4K4) AC–GEEEEKKKKGW–NH2 −4,219 14

(K4E4)4 AC–GKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEGW–NH2 −35,479 91 28
(K4E4)3 AC–GKKKKEEEEKKKKEEEEKKKKEEEEGW–NH2 −23,493 62
(K4E4)2 AC–GKKKKEEEEKKKKEEEEGW–NH2 −7,666 22
(K4E4) AC–GKKKKEEEEGW–NH2 816 −1

A4(E4K4)3A4 AC–GAAAAEEEEKKKKEEEEKKKKEEEEKKKKAAAAGW–NH2 −33,934 87
A4(E4K4)2A4 AC–GAAAAEEEEKKKKEEEEKKKKAAAAGW–NH2 −27,313 72
A4(E4K4)A4 AC–GAAAAEEEEKKKKAAAAGW–NH2 −18,885 53

A4(K4E4)3A4 AC–GAAAAKKKKEEEEKKKKEEEEKKKKEEEEAAAAGW–NH2 −38,166 98 33
A4(K4E4)2A4 AC–GAAAAKKKKEEEEKKKKEEEEAAAAGW–NH2 −29,687 78 21
A4(K4E4)A4 AC–GAAAAKKKKEEEEAAAAGW–NH2 −21,847 61

A4(E4K4)3 AC–GAAAAEEEEKKKKEEEEKKKKEEEEKKKKGW–NH2 −33,288 87
(E4K4)3A4 AC–GEEEEKKKKEEEEKKKKEEEEKKKKAAAAGW–NH2 −32,668 85

A4(K4E4)3 AC–GAAAAKKKKEEEEKKKKEEEEKKKKEEEEGW–NH2 −35,177 91 25
(K4E4)3A4 AC–GKKKKEEEEKKKKEEEEKKKKEEEEAAAAGW–NH2 −32,796 85 22

A4(E4K4)A4(E4K4)A4 AC–GAAAAEEEEKKKKAAAAEEEEKKKKAAAAGW–NH2 −31,779 83 24
A4(K4E4)A4(K4E4)A4 AC–GAAAAKKKKEEEEAAAAKKKKEEEEAAAAGW–NH2 −37,155 97 29

(E3K3)4 AC–GEEEKKKEEEKKKEEEKKKEEEKKKGWW–NH2 −25,428 67
(K3E3)4 AC–GKKKEEEKKKEEEKKKEEEKKKEEEGWW–NH2 −12,229 33

A4(E3K3)4A4 AC–GAAAAEEEKKKEEEKKKEEEKKKEEEKKKAAAAGWW–NH2 −31,869 82 21
A4(K3E3)4A4 AC–GAAAAKKKEEEKKKEEEKKKEEEKKKEEEAAAAGWW–NH2 −30,287 78 14
1

Amino acids are represented by standard one-letter codes: A, alanine; E, glutamic acid; G, glycine; and K, lysine. To remove complicating terminal formal charges, and to ameliorate end effects in the helices, the E/K regions in all of the peptides for this study were flanked by glycine residues, and capped with acetyl (Ac) and amide groups (NH2) at their N-and C-termini, respectively. C-terminal tryptophan (W) or tyrosine (Y) residues were included for concentration determination.