Skip to main content
. Author manuscript; available in PMC: 2016 Jun 2.
Published in final edited form as: Biochemistry. 2015 May 21;54(21):3360–3369. doi: 10.1021/acs.biochem.5b00174

Table 1.

Data Collection and Refinement Statistics

KPR KPRA181L
Data Collection
PDB entry 4YCA 4S3M
space group P212121 I121
unit cell dimensions [a, b, c (Å); α, β, γ (deg)] 42.2, 85.2, 177.1, 90.0, 90.0, 90.0 123.0, 66.8, 88.7, 90.0, 112.0, 90.0
resolution (Å) 1.81 (1.87–1.84)a [1.84–1.81]b 2.62 (2.82–2.72) [2.72–2.60]
completeness (%) 99.9 (100) [99.6] 99.2 (99.8) [94.4]
redundancy 13.8 (12.6) [6.6] 10.6 (3.4) [11.3]
no. of reflections 820276 214018
I/σ(I) 24.84 (2.19) [1.34] 12.88 (2.80) [1.12]
CC1/2c 0.999 (0.73) [0.53] 0.997 (0.89) [0.48]
Rmeasd (%) 10.8 (136.2) [150.2] 15.8 (102.0) [124.1]
Refinement
Rwork/Rfree 0.173/0.211 0.222/0.268
Rfree in the highest-resolution shell 0.361e 0.379e
no. of proteinf/water atoms 4740/411 4289/42
B factor (Å2) for proteinf/water 29.4/39.2 62.3/47.4
Stereochemical Ideality
bond lengths (Å2) 0.008 0.002
bond angles (deg) 1.07 0.665
φ, ψ preferred region (%) 95.60 94.79
φ, ψ additionally allowed (%) 4.03 4.83
φ, ψ disallowed region (%) 0.37g 0.39g
a

Values in parentheses are for the highest-resolution shell based on an I/σ cutoff of 2.

b

Values in brackets are for the highest-resolution shell used in refinement based on the CC1/2 cutoff (see Materials and Methods).

c

CC1/2 is the percentage of correlation between intensities from random half- data sets.20

d

Rmeas is the redundancy-independent merging R factor.44

e

Highest-resolution shells for refinement were 1.80–1.84 Å for KPR and 2.60–2.66 Å for KPRA181L.

f

Protein including the NADPH cofactor.

g

See the text for a description of the Ramachandran outlier.