Table 1.
Data Collection and Refinement Statistics
KPR | KPRA181L | |
---|---|---|
Data Collection | ||
PDB entry | 4YCA | 4S3M |
space group | P212121 | I121 |
unit cell dimensions [a, b, c (Å); α, β, γ (deg)] | 42.2, 85.2, 177.1, 90.0, 90.0, 90.0 | 123.0, 66.8, 88.7, 90.0, 112.0, 90.0 |
resolution (Å) | 1.81 (1.87–1.84)a [1.84–1.81]b | 2.62 (2.82–2.72) [2.72–2.60] |
completeness (%) | 99.9 (100) [99.6] | 99.2 (99.8) [94.4] |
redundancy | 13.8 (12.6) [6.6] | 10.6 (3.4) [11.3] |
no. of reflections | 820276 | 214018 |
I/σ(I) | 24.84 (2.19) [1.34] | 12.88 (2.80) [1.12] |
CC1/2c | 0.999 (0.73) [0.53] | 0.997 (0.89) [0.48] |
Rmeasd (%) | 10.8 (136.2) [150.2] | 15.8 (102.0) [124.1] |
Refinement | ||
Rwork/Rfree | 0.173/0.211 | 0.222/0.268 |
Rfree in the highest-resolution shell | 0.361e | 0.379e |
no. of proteinf/water atoms | 4740/411 | 4289/42 |
B factor (Å2) for proteinf/water | 29.4/39.2 | 62.3/47.4 |
Stereochemical Ideality | ||
bond lengths (Å2) | 0.008 | 0.002 |
bond angles (deg) | 1.07 | 0.665 |
φ, ψ preferred region (%) | 95.60 | 94.79 |
φ, ψ additionally allowed (%) | 4.03 | 4.83 |
φ, ψ disallowed region (%) | 0.37g | 0.39g |
Values in parentheses are for the highest-resolution shell based on an I/σ cutoff of 2.
Values in brackets are for the highest-resolution shell used in refinement based on the CC1/2 cutoff (see Materials and Methods).
CC1/2 is the percentage of correlation between intensities from random half- data sets.20
Rmeas is the redundancy-independent merging R factor.44
Highest-resolution shells for refinement were 1.80–1.84 Å for KPR and 2.60–2.66 Å for KPRA181L.
Protein including the NADPH cofactor.
See the text for a description of the Ramachandran outlier.