Table 1.
Specimens examined in this study are listed by taxon and genetic marker (Adh1-I2—intron 2 of alcohol dehydrogenase, Cytb—cytochrome-b, Fgb-I7—intron of the beta-fibrinogen, and Rbp3—interphotoreceptor retinoid-binding protein) and grouped by tribe, genus, and species group. GenBank accession (left of slash) and museum catalog (right of slash) numbers are given for each specimen. Museum acronyms are as follows: ASNHC (Angelo State Natural History Collection), BYU (Brigham Young University), CNMA (Colección Nacional de Mamíferos, Universidad Nacional Autónoma de México), PGSC (Peromyscus Genetic Stock Center), ROM (Royal Ontario Museum), TCWC (Texas Cooperative Wildlife Collection), and TTU (Museum of Texas Tech University). If museum catalog numbers were unavailable, specimens were referenced with the corresponding collector’s numbers or TK (special number of the Museum of Texas Tech University).
| Taxon | Adh1-I2 | Cytb | Fgb-I7 | Rbp3 |
|---|---|---|---|---|
| Tribe Baiomyini | ||||
| Baiomys | ||||
| B. taylori | AY994205/TTU82642 | AF548469/TTU54633 | AY274213/TTU54633 | EF989838/ROM114886 |
| Tribe Ochrotomyini | ||||
| Ochrotomys | ||||
| O. nutalli | JX910114/TCWC31929 | AY195798/TCWC31929 | AY274203/TCWC31929 | EF989862/ROM113008 |
| Tribe Neotomini | ||||
| Neotoma | ||||
| N. mexicana | AY817646/TTU79129 | AF294345/TTU79129 | AY274200/TTU79129 | JX910120/TTU79129 |
| Tribe Reithrodontomyini | ||||
| Habromys | ||||
| H. ixtlani | AY994239/TK93160 | DQ000482/TK93160 | FJ214701/TTU82703 | EF989842/CNMA29849 |
| Isthmomys | ||||
| I. pirrensis | FJ214668/TTU39162 | FJ214681/TTU39162 | FJ214692/TTU39162 | EF989846/ROM116308 |
| Neotomodon | ||||
| N. alstoni | AY994210/TK45309 | AY195796/TK45302 | AY274202/TK45309 | EF989851/ASNHC1595 |
| Megadontomys | ||||
| M. thomasi | AY994208/TK93388 | AY195795/TK93388 | FJ214693/TK93388 | EF989849/CNMA29186 |
| Onychomys | ||||
| O. arenicola | JX910115/TTU67559 | AY195793/TTU67559 | AY274204/TTU67559 | EF989855/ROM114904 |
| Osgoodomys | ||||
| O. banderanus | AY994209/TK45952 | DQ000473/TK45952 | FJ214694/TK45952 | EF989857/ASNHC2664 |
| Peromyscus | ||||
| aztecus group | ||||
| P. evides | FJ214670/TTU82696 | FJ214685/TTU82696 | FJ214700/TTU82696 | JX910121/TTU82696 |
| P. spicilegus | AY994234/TK45255 | FJ214669/TK45255 | FJ214695/TK45255 | JX910122/TK47888 |
| boylii group | ||||
| P. boylii | AY994227/TTU82688 | AF155388/TTU81702 | AY274208/TTU81702 | EF989871/ASNHC3449 |
| P. levipes | AY994224/TK47819 | DQ000477/TK47819 | FJ214707/TTU105150 | JX910123/TK47819 |
| californicus group | ||||
| P. californicus | AY994211/TTU83292 | AF155393/TTU81275 | FJ214697/TTU83291 | EF989873/PGSCIS1590 |
| crinitus group | ||||
| P. crinitus | AY994213/DSR6171 | FJ214684/TK119629 | FJ214698/TK119629 | EF989874/BYU16629 |
| eremicus group | ||||
| P. eremicus | AY994212/TTU81850 | AY322503/TTU83249 | FJ214699/TTU83249 | EF989876/BYU17952 |
| furvus group | ||||
| P. furvus | JX910116/FXG1168 | AF271032/CNMA32298 | JX910113/FXG1168 | JX910124/FXG1168 |
| hooperi group | ||||
| P. hooperi | FJ214672/TTU104425 | DQ973103/TTU104425 | FJ214704/TTU104425 | JX910125/TTU104425 |
| leucopus group | ||||
| P. gossypinus | FJ214671/TTU80682 | DQ973102/TTU80682 | FJ214702/TTU80682 | JX910126/TTU80682 |
| P. leucopus | AY994240/TTU75694 | DQ000483/TTU101645 | FJ214706/TTU101645 | EF989880/ROM101861 |
| maniculatus group | ||||
| P. maniculatus | AY994242/TTU97830 | DQ000484/TTU38739 | FJ214708/TTU97830 | EF989884/ROM98941 |
| P. melanotis | FJ214673/TK70997 | AF155398/TK70997 | FJ214711/TK70997 | EF989891/PGSC25 |
| megalops group | ||||
| P. megalops | AY994217/TTU82712 | DQ000475/TTU82712 | FJ214709/TTU82712 | JX910127/TTU82712 |
| melanophrys group | ||||
| P. melanophrys | AY994216/TTU75509 | AY322510/TTU75509 | FJ214710/TTU75509 | EF989890/PGSCXZ1073 |
| mexicanus group | ||||
| P. mexicanus | AY994236/TTU97013 | JX910118/TTU105005 | AY274210/TTU82759 | EF989895/ROM113250 |
| P. nudipes | AY994238/TTU96972 | FJ214687/TTU96972 | FJ214713/TTU96972 | EF989893/ROM113216 |
| truei group | ||||
| P. attwateri | AY994220/TTU55688 | AF155384/TTU55688 | AY274207/TTU55688 | JX910128/TTU55688 |
| P. gratus | AY994218/TK46354 | AY376421/TK46354 | FJ214703/TK46354 | JX910129/TK46354 |
| Unknown group | ||||
| P. ochraventer | FJ214676/TTU104930 | JX910119/TTU104930 | FJ214715/TTU104930 | JX910130/TTU104930 |
| P. pectoralis | AY994221/TK48645 | AY376427/TK48642 | FJ214716/TK48645 | JX910131/TK48645 |
| Podomys | ||||
| P. floridanus | AY994214/TTU97867 | DQ973109/TTU97867 | FJ214723/TTU97867 | EF989878/TTU97866 |
| Reithrodontomys | ||||
| R. fulvescens | AY994207/TTU54898 | AF176257/TTU54898 | AY274211/TTU54898 | EF989901/ASNHC3465 |
| R. sumichrasti | JX910117/TTU54952 | AF176256/TTU54952 | AY274212/TTU54952 | EF989924/ROM98383 |
| R. megalotis | AF176248/TTU40942 | AF176248/ TTU40942 | KJ697789/TTU40942 | EF989909/ASNHC2133 |
| R. mexicanus | KJ697791/TTU85234 | AY859453/ROM101508 | — | EF989911/ROM98468 |