Table 2.

Differentially expressed genes in TNF and other inflammatory pathways.

Feature ID	Gene ID	Fold change (Day 15 vs Day 5)	Fold change (Day 21 vs Day 5)	P-value (Day 15 vs Day 5)	P-value (Day 21 vs Day 5)
TNF ligands and receptors
ENSG00000121858.6	TNFSF10	4.06	11.4	0.04	0.05
ENSG00000239697.4	TNFSF12	11.82	7.99	2.85E−04	2.88E−03
ENSG00000183578.4	TNFAIP8L3	3.85	3.43	3.61E−03	2.13E−03
ENSG00000120889.8	TNFRSF10B	1.36	1.54	7.62E−05	2.90E−03
ENSG00000164761.4	TNFRSF11B	−3.21	−2.01	0.04	0.01
ENSG00000127863.11	TNFRSF19	−3.13	−3.91	3.62E−04	1.68E−03
ENSG00000215788.5	TNFRSF25	−3.41	−4.07	4.63E−03	9.28E−05
ENSG00000141655.9	TNFRSF11A	−6.81	−6.81	6.68E−06	6.68E−06
Intra-cellular factors
ENSG00000196954.7	CASP4	7.07	17.6	0.14	0.05
ENSG00000156711.10	MAPK13	18.33	16.96	4.81E−05	2.07E−03
ENSG00000125347.8	IRF1	1.96	3.7	0.02	1.97E−03
ENSG00000064012.15	CASP8	3.99	3.28	8.92E−03	0.01
ENSG00000100030.9	MAPK1	3.76	2.48	2.52E−03	1.08E−03
ENSG00000109320.6	NFKB1	2.45	2.45	0.02	0.06
ENSG00000160703.9	NLRX1	2.55	2.27	0.05	0.04
ENSG00000138794.5	CASP6	1.85	2.14	0.02	6.67E−03
ENSG00000104825.11	NFKBIB	1.17	1.36	0.02	3.59E−04
ENSG00000168040.4	FADD	−1.48	−2.07	5.38E−03	1.62E−03
ENSG00000076604.8	TRAF4	−1.58	−2.08	0.02	8.68E−03
ENSG00000107643.10	MAPK8	−2.08	−2.09	0.01	9.92E−05
ENSG00000022556.10	NLRP2	−1.27	−3.58	3.55E−03	4.01E−03
ENSG00000127191.11	TRAF2	−4	−4.06	0.02	0.03
ENSG00000106144.14	CASP2	−4.14	−5.44	7.62E−05	3.13E−04
HLA markers
ENSG00000198502.5	HLA-DRB5	14.6	6.46	7.39E−03	0.01
ENSG00000196126.6	HLA-DRB1	10.07	4.92	6.12E−03	0.01
ENSG00000204592.5	HLA-E	2.54	4.88	0.02	6.28E−03
ENSG00000204525.8	HLA-C	1.28	1.5	0.05	0.03
ENSG00000206503.6	HLA-A	−1.33	1.05	7.10E−03	0.64
ENSG00000234745.3	HLA-B	−3.2	−2.02	0.02	0.03
ENSG00000179344.11	HLA-DQB1	−2.25	−2.11	0.02	0.06

Upregulated genes are shaded in grey.