Table 1. Primers used in conventional, inverse and real-time PCR reactions.
Primer | Primer sequence (5' – 3') | Size (bp) | Target |
---|---|---|---|
Primers for conventional PCR | |||
Ges F
Ges R |
GCGTTTTGCAATGTGCTC
CCAGTTTTCTCTCCAACAACC |
519 | Internal fragment of
bla GES gene |
Primers for inverse PCR | |||
Gcu14 FSQ
Gcu14 RSQ |
AGCAATCAACACACAGGGG
CTCGCGTAAATGCACCGCTT |
130 | gcu14 circular form |
GES FSQ
GES RSQ |
CAAGTTATTACACAACTCAT
AGTGCGTGAATGAAGCGCAT |
110 | bla GES-1 circular form |
AACA4 FSQ
AACA4 RSQ |
GCCAGGCATTCGAGCGAACAC
ATTTAGCCACTCACATAGAGC |
188 | aacA4 circular form |
Primers and probes for real time PCR (TaqMan) | |||
RpsL F
RpsL R Probe |
GCCTGCGCTGCAAAACT
TTTCGGCGTGGTGGTGTAT TCGTGGCGTATGCACC |
67 | rpsL transcripts |
Gcu14 F
Gcu14 R Probe |
CATGCGCTTCTTGGTTCGT
ACGCCAGCTTGGATGCAA ATGCCACGAGACCTT |
56 | gcu14 transcripts |
Ges F2
Ges R2 Probe |
GTGCAGCTTAGCGACAATGG
CACAGAGTCGCCAATTTTACGA AATTGCAGCAGGTCCGCC |
99 | bla GES-1 transcripts |
AacA4 F
AacA4 R Probe |
CAAGCGTTTTAGCGCAAGAGT
TCGGCTCTCCATTCAGCATTG CCGTCACTCCATACATTG |
59 | aacA4 transcripts |
Ges F3
AacA4 R2 Probe |
TCCTGAGCACGGACAAATAG
TCATAGAGCATCGCAAGGTC TTCCGTCACACTGCGCCTCA |
134 | Polycistronic transcripts |