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. 2015 Oct 14;4:1070. [Version 1] doi: 10.12688/f1000research.7035.1

Figure 10. An MA-plot of changes induced by treatment.

Figure 10.

The log2 fold change for a particular comparison is plotted on the y-axis and the average of the counts normalized by size factor is shown on the x-axis (“M” for minus, because a log ratio is equal to log minus log, and “A” for average). Each gene is represented with a dot. Genes with an adjusted p value below a threshold (here 0.1, the default) are shown in red.