Table 6. Diversity and frequency of single-nucleotide polymorphisms displayed by Giardia duodenalis assemblage B isolates at the beta giardin locus (partial sequence between positions 107 to 575) identified in the present study.
Nucleotide at position of reference sequence AY072727.1 | |||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
126 | 132 | 133 | 159 | 165 | 171 | 183 | 186 | 189 | 218 | 228 | 240 | 256 | 258 | 274 | 283 | 309 | 324 | 325 | 340 | 345 | 347 | 354 | 393 | 426 | 427 | 453 | 454 | 455 | 456 | 471 | 484 | 485 | 519 | 520 | 543 | 564 | |||
C | T | G | G | C | A | A | G | G | T | A | T | C | G | A | A | C | C | A | G | G | A | G | C | C | G | C | G | A | G | T | G | A | T | G | C | C | |||
Isolate | Number of isolates | Cluster | |||||||||||||||||||||||||||||||||||||
KT310382 | 1 | 1 | T | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
KT310383 | 1 | 1 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | T | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
KT310384 | 1 | 1 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Y | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Y | . | . | . |
KT310385 | 1 | 2 | . | . | A 1 | A | T | . | . | . | . | . | . | . | . | . | . | . | T | T | . | . | . | . | . | T | . | . | . | . | . | . | C | . | . | . | . | . | . |
KT310386 | 35 | 2 | . | . | . | A | T | . | . | . | . | . | . | . | . | . | . | . | T | T | . | . | . | . | . | T | . | . | . | . | . | . | C | . | . | . | . | . | . |
KT310387 | 1 | 2 | . | . | . | A | T | . | . | R | . | . | . | . | . | . | . | . | T | T | . | . | . | . | . | T | . | . | . | . | . | . | C | . | . | . | . | . | . |
KT310388 | 1 | 2 | . | . | . | A | T | . | . | . | . | Y 2 | . | . | . | . | . | . | T | T | . | . | . | . | . | T | . | . | . | . | . | . | C | . | . | . | . | . | . |
KT310389 | 1 | 2 | . | . | . | A | T | . | . | . | . | . | . | . | Y | . | . | . | T | T | . | . | . | . | . | T | . | . | . | . | . | . | C | . | . | . | . | . | . |
KT310390 | 1 | 2 | . | . | . | A | T | . | . | . | . | . | . | . | . | . | R 4 | . | T | T | . | . | . | . | . | T | . | . | . | . | . | . | C | . | . | . | . | . | . |
KT310391 | 1 | 2 | . | . | . | A | T | . | . | . | . | . | . | . | . | . | . | . | T | T | R 6 | . | . | . | . | T | . | . | . | . | . | . | C | . | . | . | . | . | . |
KT310392 | 1 | 2 | . | . | . | A | T | . | . | . | . | . | . | . | . | . | . | . | T | T | . | . | . | R 8 | . | T | . | . | . | . | R 11 | . | C | . | . | . | . | . | . |
KT310393 | 1 | 2 | . | . | . | A | T | . | . | . | . | . | . | . | . | . | . | . | T | T | . | . | . | . | . | T | . | . | . | . | . | . | C | . | . | Y | . | . | . |
KT310394 | 1 | 2 | . | . | . | R | T | . | . | . | . | . | . | . | . | . | . | . | T | T | . | . | . | . | . | T | . | . | . | . | . | . | C | . | . | . | . | . | . |
KT310395 | 2 | 2 | . | . | . | R | T | . | . | . | . | . | . | . | . | . | . | . | T | Y | . | . | . | . | . | T | . | . | . | . | . | . | Y | . | . | . | . | . | . |
KT310396 | 2 | 2 | . | . | . | . | T | . | . | . | . | . | . | . | . | . | . | . | T | T | . | . | . | . | . | T | . | . | . | . | . | . | C | . | . | . | . | . | . |
KT310397 | 1 | 2 | . | . | . | . | T | . | . | . | . | . | . | . | . | . | R 4 | . | T | T | . | . | . | . | . | T | . | . | . | . | . | . | C | . | . | . | . | . | . |
KT310398 | 1 | 2 | . | . | . | . | T | . | . | . | . | . | . | . | . | . | . | . | T | T | . | . | . | . | . | T | Y | . | . | . | . | . | C | . | . | . | . | . | . |
KT310399 | 1 | 2 | . | . | . | . | T | . | . | . | . | . | . | . | . | . | . | . | T | T | . | . | . | . | . | T | . | . | . | . | . | . | C | . | . | . | R 14 | . | . |
KT310400 | 4 | 2 | . | . | . | . | T | . | . | . | . | . | . | . | . | . | . | . | T | . | . | . | . | . | . | T | . | . | . | . | . | . | . | . | . | . | . | . | . |
KT310401 | 1 | 2 | . | . | . | . | T | . | . | . | . | . | . | . | . | . | . | . | T | . | . | . | . | . | . | T | . | . | . | . | . | . | . | . | R 13 | . | . | . | . |
KT310402 | 1 | 3 | . | Y | . | A | Y | R | R | . | . | . | R | . | . | R | . | . | T | T | . | . | . | . | . | T | . | . | M | . | . | R | C | . | . | . | . | . | . |
KT310403 | 1 | 4 | . | . | . | . | Y | . | R | . | R | . | . | . | . | . | . | . | T | Y | . | . | . | . | . | Y | . | . | . | . | . | . | . | . | . | Y | . | . | Y |
KT310404 | 1 | 5 | . | . | . | . | T | . | . | . | . | . | . | . | . | . | . | . | T | . | . | R 7 | R | . | . | . | . | R 9 | . | R 10 | . | . | . | R 12 | . | . | . | T | . |
KT310405 | 1 | 6 | . | . | . | . | . | . | R | . | . | . | . | Y 3 | M | . | . | R 5 | Y | . | . | . | . | . | R | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
KT310406 | 1 | 7 | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | . | T | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | T |
M: A/CA; R: A/G; Y: C/T.
1p.V47M.
2p.I75T.
3p.L88M.
4p.I94V.
5p.M97V.
6p.T111A.
7p.E116K.
8p.N118S.
9p.E145K.
10p.E154K.
11p.E154G.
12p.E164K.
13p.E164G.
14p.A176T.