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. 2015 Nov 23;2:61. doi: 10.3389/fvets.2015.00061

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Copyright © 2015 Mon, Saelao, Halstead, Chanthavixay, Chang, Garas, Maga and Zhou.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Different abundances of cecal microbial communities between infected and non-infected group at 7 DPI. (A) Taxonomic cladogram generated from LefSe analysis showing significant difference in microbiota profile of non-infected (red) and S. Enteritidis-infected (green) at 7 DPI. (B) Differently abundant taxa detected with cut-off value of linear discriminant analysis (LDA) score >2.0. Non-infected enriched taxa are indicated with negative LDA score (red) and taxa enriched in S. Enteritidis-infected have positive LDA score (green). (C) Comparison of relative abundance levels of cecal microbiota at family level in treatment group was evaluated. The boxplot shows the quartiles above and below the median with dark line at center of the box denoting median, black dots showing the outlier. Abbreviation: NI_8 D, non-infected chicks at 8 days old; SE_7 DPI, S. Enteritidis-infected chicks at 7 days post infection.