Table 5.

Transcriptional patterns of C1A cellulosomal genes on various substrates

Transcripts	Number of transcripts when grown on
	Alfalfa	Energy cane	Corn stover	Sorghum
Cellulosomal transcripts
Significantly upregulateda	52	53	56	47
Upregulatedb	24	23	31	28
Downregulatedc	32	29	34	22
Significantly downregulatedd	47	49	54	41
No changee	141	143	121	158

^aSignificantly upregulated refers to the number of transcripts with a differential expression p value <0.01 as calculated by the nbinomTest function in the R package DESeq [44]

^bUpregulated refers to the number of transcripts with a differential expression p value between 0.01 and 0.1 as calculated by the nbinomTest function in the R package DESeQ [44]

^cDownregulated refers to the number of transcripts with a differential expression p value <0.01 as calculated by the nbinomTest function in the R package DESeq [44]

^dSignificantly downregulated refers to the number of transcripts with a differential expression p value between 0.01 and 0.1 as calculated by the nbinomTest function in the R package DESeq [44]

^eNo change refers to the number of transcripts with a differential expression p value >0.1 as calculated by the nbinomTest function in the R package DESeq [44]