Table S1.
Pattern or concatenated pattern | Occurrence |
A | |
ERERRR* | 42 |
ERRRRR† | 30 |
REERRR‡ | 29 |
REEERR | 12 |
REER=R‡ | 11 |
ERERER* | 6 |
ERER=R* | 4 |
ERRERR | 4 |
REERER‡ | 4 |
EREERR | 4 |
ERRR=R† | 2 |
B | |
RE | — |
ER | 32 |
RER | 52 |
ERE | — |
RERE | — |
ERER | 56 |
RERER | 15 |
ERERE | — |
RERERE | — |
ERERER | 10 |
For each of the 720 direct mutational trajectories from MK:acca to YQ:tggt, we analyzed for each mutational step the environmental conditions that allow fixation of the mutation. R indicates that an environment without IPTG (repression) is required for the fixation of the mutation. E indicates that an environment with IPTG (induction) is required; = indicates that there are no requirements (mutation fixation can occur in both environments). Under A are patterns of environmental requirement sorted by occurrence (i.e., the number of accessible direct paths corresponding to the given pattern of environmental requirements). Under B are statistics on the concatenated patterns. To classify the patterns regardless of the time spent in each environment, the same environmental episodes are concatenated. For example, the first pattern under A is concatenated as ERER, because there are only three environmental changes. The concatenated patterns are sorted by length. When both environments allow fixation, = is counted one time as R and one time as E; — indicates that no occurrence of the corresponding pattern of requirement is observed.
Indicated groups are to show which other patterns a pattern containing = could be associated with if one were to differentiate = as either R or E; for instance, patterns ERERRR and ERERER are specific instances of pattern ERER=R.