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. 2015 Nov 13;112(48):14906–14911. doi: 10.1073/pnas.1510282112

Table S1.

Environmental patterns allowing accessibility

Pattern or concatenated pattern Occurrence
A
 ERERRR* 42
 ERRRRR 30
 REERRR 29
 REEERR 12
 REER=R 11
 ERERER* 6
 ERER=R* 4
 ERRERR 4
 REERER 4
 EREERR 4
 ERRR=R 2
B
 RE
 ER 32
 RER 52
 ERE
 RERE
 ERER 56
 RERER 15
 ERERE
 RERERE
 ERERER 10

For each of the 720 direct mutational trajectories from MK:acca to YQ:tggt, we analyzed for each mutational step the environmental conditions that allow fixation of the mutation. R indicates that an environment without IPTG (repression) is required for the fixation of the mutation. E indicates that an environment with IPTG (induction) is required; = indicates that there are no requirements (mutation fixation can occur in both environments). Under A are patterns of environmental requirement sorted by occurrence (i.e., the number of accessible direct paths corresponding to the given pattern of environmental requirements). Under B are statistics on the concatenated patterns. To classify the patterns regardless of the time spent in each environment, the same environmental episodes are concatenated. For example, the first pattern under A is concatenated as ERER, because there are only three environmental changes. The concatenated patterns are sorted by length. When both environments allow fixation, = is counted one time as R and one time as E; — indicates that no occurrence of the corresponding pattern of requirement is observed.

*, †, ‡

Indicated groups are to show which other patterns a pattern containing = could be associated with if one were to differentiate = as either R or E; for instance, patterns ERERRR and ERERER are specific instances of pattern ERER=R.