Table S3.

The number of orthogroups identified between tetrapods and teleosts for 130 human protein-coding genes used in Sato et al. (13)

Gene/orthogroup category	Sato et al.	This study*
		Without criterion	With criterion†
Loci in human genome	130	130	—
No clear orthogroups	11	8	—
Putative orthogroups	119	122	58
Multiply counted orthogroups	3	5	3
Identified orthogroups	116	117	55
1to2 category (paired by TGD)	45	48	17
1to1 category (losing one gene lineage)	71	69	38
TGD-derived paired gene lineages/	38.79%	41.02%	30.90%
total loci (gene lineages) in common ancestor	(45/116)	(48/117)	(17/55)

^*For the results from the 130 human protein-coding gene analyses, see fish-evol.unit.oist.jp/db/TGD16/SHN/SB70BL10/130results.html.

^†Orthogroups fulfilling the BS 70% criterion (Fig. S1C).