FIGURE 3.

The dependency parse tree of a sample sentence. The tree is generated for the sentence “Furthermore, gap associated with murine IL-12 gene in a DNA vaccine formulation partially protected mice against experimental infection.” from the abstract of (Rosinha et al., 2002). Host and pathogen genes identified by SciMiner are shown in green and red, respectively. The Stanford parser was used to generate the parse tree. advmod, adverb modifier; amod, adjectival modifier; det, determiner; dobj, direct object; nn, noun compound modifier; nsubj, nominal subject; prep_against, preposition against; prep_in, preposition in; prep_with, preposition with; vmod, reduced non-finite verbal modifier.