Table 2. Summary of whole genome bisulfite sequencing alignment.

Sample	# paired-ends reads sequenced	# ends sequenced (reads x2)	# ends aligned	Alignment rate	Covered_ CpGs	Coverage	Mean Depth	Conversion Rate
FA_Ext_G0	183161558	366323116	299150337	0.82	25514228	0.90	7.21	0.997
FA_G0	227927743	455855486	372489752	0.82	25647479	0.91	8.60	0.997
FA_G1	145296086	290592172	239512225	0.82	24826013	0.88	5.28	0.9971
FA_G2	169775086	339550172	276277216	0.81	25322198	0.90	6.60	0.9971
FB_Ext_G0	165662207	331324414	269406543	0.81	25350618	0.90	6.29	0.9971
FB_G0	173184150	346368300	280062174	0.81	25393776	0.90	6.92	0.997
FB_G1	137373738	274747476	224625545	0.82	25312601	0.90	5.69	0.9968
FB_G2	139872847	279745694	224734195	0.80	25313403	0.90	5.61	0.9971
FC_Ext_G0	186215053	372430106	302409275	0.81	25647389	0.91	7.54	0.997
FC_G0	183961564	367923128	299798716	0.81	25665135	0.91	7.48	0.997
FC_G1	180202865	360405730	294426472	0.82	25602198	0.91	7.13	0.9969
FC_G2	159859928	319719856	256338433	0.80	25511322	0.90	6.51	0.9968