Table 3.
Genome statistics
| Attribute | Number of genes | % of Total genesa |
|---|---|---|
| Genome size (bp) | 1,611,988 | 100.00 |
| DNA codingb (bp) | 1,270,203 | 78.8 |
| DNA G+C (bp) | 772,789 | 47.9 |
| DNA scaffolds | 1 | 100.00 |
| Total genes | 1697 | 100.00 |
| Protein coding genes | 1455 | 85.7 |
| RNA genes | 50 | 3.0 |
| Pseudo genes | 192 | 11.3 |
| Genes in internal clusters | NDc | NDc |
| Genes with function prediction | 1334 | 78.6 |
| Genes assigned to COGs | 1389 | 81.9 |
| Genes with Pfam domains | 1066 | 62.8 |
| Genes with signal peptides | 343 | 20.2 |
| Genes with transmembrane helices | 129 | 7.6 |
| CRISPR repeats | 2 | – |
a) The total is based on either the size of the genome in base pairs or the total number of genes in the annotated genome
b) Corresponding to functional CDS. Pseudogenes are not included in this calculation
c) ND not determined