Table 1.

Number of genes reported in differential expression analysis by DESeq2 (P-adj < 0.05) and EdgeR (FDR < 0.05)

Condition		EdgeR	DESeq2	Common	Only EdgeR	Only DESeq2
3 h	all	10	5	4	6	1
	Up regulated	3	1	1	2	0
	Down regulated	7	4	3	4	1
6 h	all	33	340	27	6	313
	Up regulated	24	245	23	1	222
	Down regulated	9	95	4	5	91
9 h	all	151	458	145	6	313
	Up regulated	105	273	104	1	169
	Down regulated	46	185	41	5	144
12 h	all	1059	1980	1038	21	942
	Up regulated	623	1123	613	10	510
	Down regulated	436	857	425	11	432
	all	39	16	13	26	3
12 h no toxin	Up regulated	20	7	4	16	3
	Down regulated	19	9	9	10	0