Table 2.
Summary statistics of the identified variants
| Total SNPs | 10,796,794 |
| Homozygous SNPs | 5,078,645 (47.0) |
| Heterozygous SNPs | 5,718,149 (53.0) |
| Novel SNPs | 482,835 (4.5) |
| Known SNPs | 10,313,959 (95.5 ) |
| Biallelic SNPs | 10,780,608 (99.9) |
| Triallelic SNPs | 16,186 (0.1) |
| Ts:Tv | 2.11:1.00 |
| Total indels | 1,295,036 |
| Heterozygous indels | 566,749 (43.8) |
| Homozygous indels | 728,287 (56.2) |
| Novel indels | 231,359 (17.9) |
| Known indels | 1,063,677 (82.1) |
| Deletions | 655,942 (50.7) |
| Insertions | 639,094 (49.3) |
Values in parentheses are the percentage of variants in the specific class of the total variants that type of variant