Table 3.
QTL regions represented by multiple MTAs for seedling resistance to stem rust race TTKSK in the whole collection (bold), in the durum subsample (italics) and in the Q2 group (underlined).
| Marker | Chr. | Position (cM) | Whole Collection | Durum Subsample | Q2 group | Other MTAs in the region | Range R2(%) | Chr. Interval | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| P-value (Q) GLM (FDR threshold) | P-value (Q + K) MLM | R2 MLM (%) | P-value (Q) GLM (FDR threshold) | P-value (Q + K) MLM | R2 MLM (%) | P-value (Q) GLM (FDR threshold) | P-value (Q + K) MLM | R2 MLM (%) | ||||||
| tPt-5080* | 1B | 63.3 | 2.8E-04 (0.05) | 1.9E-02 | 2 | – | – | – | 1.6E-06 (0.05) | 1.0E-02 | 7 | wPt-7652*, wP-t6608*, tPt-1772*, wPt-1238*, wPt-2395*, wPt-6370* | 2–7 | 0.0 |
| wPt-4680 | 4A | 128.9 | 9.4E-05 (0.05) | 3.8E-02 | 2 | – | – | – | – | – | – | wPt-9196, wPt-0798, wPt-5112, wPt-5434, wPt-1007, wPt-3729, wPt-6757, wPt-5055 | 2–8 | 9.7 |
| Xgwm495 | 4B-2 | 84.0 | 1.0E-03 (0.05) | 2.9E-03 | 4 | 8.4E-03 (–) | 2.4E-02 | 4 | 2.0E-03 (–) | 3.6E-02 | 5 | wPt-0872, wPt-4931 | 2 | 9.6 |
| wPt-9724 | 5B-1 | 16.3 | – | – | – | – | – | – | 5.7E-04 (0.05) | 1.7E-02 | 6 | wPt-9666, wPt-1420, wPt-6136* | 5-8 | 12.1 |
| wPt-0054 | 5B-3 | 3.5 | 3.0E-03 (0.05) | 1.7E-02 | 3 | 3.2E-03 (–) | 3.4E-02 | 4 | – | – | – | wPt-8920, wPt-0295 | 5-7 | 1.5 |
| wPt-4229 | 6A | 163.2 | 2.6E-04 (0.05) | 1.4E-02 | 3 | 2.1E-03 (–) | 1.4E-02 | 5 | – | – | – | wPt-9474, wPt-6829, wPt-2632, wPt-8773 | 3-7 | 13.8 |
| wPt-9971 | 6B | 62.3 | 9.6E-04 (0.05) | 4.0E-03 | 4 | – | 4.7E-02 | 3 | – | – | – | wPt-2479, wPt-2587 | 2–4 | 1.5 |
| wPt-3606 | 6B | 94.2 | 2.3E-03 (0.05) | 2.7E-03 | 4 | – | – | – | – | – | – | Xgwm193 | 2 | 13.6 |
| Xgwm124 | 1B | 143.2 | 6.3E-03 (0.1) | 2.3E-02 | 2 | 7.5E-03 (–) | 6.5E-03 | 6 | – | 1.7E-02 | 6 | wPt-7066, wPt-9032 | 6 | 5.0 |
| wPt-4361 | 1B | 208.3 | – | – | – | – | – | – | 2.2E-03 (0.1) | 2.6E-02 | 10 | wPt-1973, wPt-4651 | 2–7 | 9.0 |
| wPt-0002* | 7A-1 | 4.2 | 6.3E-03 (0.1) | 2.5E-02 | 2 | 2.3E-03 (–) | 2.2E-02 | 5 | – | – | – | wPt-4625*, tPt-6794, wPt-5092 | 2–6 | 0.3 |
| wPt-7975 | 7B | 46.1 | 1.4E-02 (0.1) | 5.1E-03 | 4 | – | – | – | – | – | – | wPt-3147, wPt-5846, Xwmc606 | 3–5 | 8.6 |
| Xgwm633 | 1A-3 | 16.0 | – | 1.5E-02 | 3 | 2.2E-02 (–) | 2.6E-02 | 4 | – | – | – | wPt-2847, wPt-4408, wPt-7339 | 4–5 | 8.9 |
| wPt-5485* | 1B | 81.4 | – | – | – | – | – | – | 1.8E-02 (–) | 1.3E-02 | 7 | wPt-1374 | 5 | 4.9 |
| wPt-2858 | 2A-3 | 7.6 | – | – | – | 4.9E-02 (–) | 3.7E-02 | 3 | – | – | – | wPt-9586, wPt-1615 | 3–4 | 0.5 |
| Xgwm1084 | 4B-2 | 106.9 | – | – | – | – | – | – | – | 4.5E-04 | 4 | wPt-7412 | 4 | 10.0 |
| wPt-11612 | 6A | 151.3 | – | – | – | – | 3.2E-02 | 4 | – | – | – | wPt-7655, wPt-6678 | 4–5 | 5.1 |
Asterisks (*) indicate the DArT markers projected on the durum wheat consensus map. Chr, chromosome.