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. 2015 Dec 10;16:406. doi: 10.1186/s12859-015-0832-5

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© Rivas and Eddy. 2015

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 8 — Alignment accuracy and homology coverage for the Local Homology set of subregions embedded in nonhomologous sequence. Panel (a) displays the measures of alignment accuracy. Panel (b) displays coverage measures. The long-branch and short-branch parameterizations are identical to those described in Fig. 7. The results presented correspond to the evolutionary model AIF using the alignment program e2msa