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. 2015 Dec 10;16:406. doi: 10.1186/s12859-015-0832-5

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© Rivas and Eddy. 2015

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 9 — Alignment accuracy of the optimal-branch e2msa.AIF method both for the Global and Local homology sets. The results for the short-branch and long-branch parameterizations for the Global (Local) homology set are the same as those provided in Fig. 7 (Fig. 8 a) now placed in reference to the optimal-branch parameterization