Table 3.
Name | Starta | Enda | Lengthb | Direction | TSS coordinatesc | Conservationd |
---|---|---|---|---|---|---|
ES003 | 29551 | 29603 | 53 | + | I | Esc,Shi |
ES036 | 740211 | 740253 | 43 | + | - | Esc,Shi |
ES056 | 1102475 | 1102566 | 92 | - | +1 | Esc,Shi,Cit |
ES098 | 1814204 | 1814245 | 42 | + | - | Esc,Shi,Sal |
ES173 | 3154543 | 3154606 | 64 | + | +8 | Esc,Shi |
ES180 | 3295030 | 3295119 | 90 | - | +11 | Esc,Shi |
ES205 | 3657034 | 3657105 | 72 | + | I | Esc,Shi |
ES220 | 4010909 | 4011013 | 105 | + | I | Esc,Shi |
ES222 | 4056241 | 4056348 | 108 | + | −12 | Esc,Shi |
ES239 | 4434589 | 4434711 | 123 | + | I | Esc,Shi |
aThe transcript coordinates determined by RNA seq data
bThe transcript length determined by RNA seq data
cThe presence of experimentally determined transcription start sites (TSS) from previous studies is indicated, as well as any differences in TSS coordinates between previous studies and present study. For example ‘+1’ denotes a previously determined TSS one nucleotide downstream of that determined in this study. Identical coordinates are indicated with ‘I’ and cases with no previously determined TSSs or predicted promoters are marked with ‘-’
dThe sequence conservation of the transcripts in other bacterial genera is indicated: Esc Escherichia, Shi Shigella, Sal Salmonella, Cit Citrobacter