Skip to main content
. 2015 Dec 10;16:1051. doi: 10.1186/s12864-015-2231-8

Table 3.

Selected novel intergenic small RNA transcripts

Name Starta Enda Lengthb Direction TSS coordinatesc Conservationd
ES003 29551 29603 53 + I Esc,Shi
ES036 740211 740253 43 + - Esc,Shi
ES056 1102475 1102566 92 - +1 Esc,Shi,Cit
ES098 1814204 1814245 42 + - Esc,Shi,Sal
ES173 3154543 3154606 64 + +8 Esc,Shi
ES180 3295030 3295119 90 - +11 Esc,Shi
ES205 3657034 3657105 72 + I Esc,Shi
ES220 4010909 4011013 105 + I Esc,Shi
ES222 4056241 4056348 108 + −12 Esc,Shi
ES239 4434589 4434711 123 + I Esc,Shi

aThe transcript coordinates determined by RNA seq data

bThe transcript length determined by RNA seq data

cThe presence of experimentally determined transcription start sites (TSS) from previous studies is indicated, as well as any differences in TSS coordinates between previous studies and present study. For example ‘+1’ denotes a previously determined TSS one nucleotide downstream of that determined in this study. Identical coordinates are indicated with ‘I’ and cases with no previously determined TSSs or predicted promoters are marked with ‘-’

dThe sequence conservation of the transcripts in other bacterial genera is indicated: Esc Escherichia, Shi Shigella, Sal Salmonella, Cit Citrobacter