Table 2.

Quality statistics for RNA sequencing data

Data Set	Sample Name	Total Reads	Length (nt)	Q30a (%)	Total (Gb)
Raw Data	Mock-inoculated 1	78 344 666	100	87.1	7.83
	Mock-Inoculated 2	86 178 906	100	87.1	8.62
	Mock-Inoculated 3	82 271 364	100	87.1	8.23
	Inoculated 1	41 756 756	100	86.8	4.18
	Inoculated 2	71 697 894	100	87.1	7.17
	Inoculated 3	80 588 142	100	87.1	8.06
	Total	440 837 728			44.08
Pre-processed Data	Mock-inoculated 1	68 237 135	41–100	100.0	6.45
	Mock-Inoculated 2	75 081 850	41–100	100.0	7.10
	Mock-Inoculated 3	71 683 022	41–100	100.0	6.77
	Inoculated 1	36 270 688	41–100	100.0	3.43
	Inoculated 2	62 484 245	41–100	100.0	5.90
	Inoculated 3	70 235 351	41–100	100.0	6.64
Dataset 1	Total	383 992 290	41–100	100.0	36.29
Dataset 2	Total	248 994 870	41–100	100.0	23.53

^aPercentage of reads in the library with a Phred score > 30